Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3058 ATGCTTACATGCATAGCACGTCCGAAGAAACTCGGCGACGACTCACTGAGTCACGGCGACGATTCAGACTCAAACAACAATGCTAAGAACGTAAAATCGCTGACGTGTCAGATAAAAGACATGGCGTTAAAAGCTTCCGGCGTTTACAAACACTGTAACCCCTGCGCGCCGGCGAGTCGTGTCAGGAACGGTGGAAATGGAAATTCAGAGTCGGAAACTGATTCGGAGAAGTTTCGGAGAACGAGGACATGGGGAAAGGAGATGGAAGCGAGGTTGAAAGGGATCTCGAGTGGAGAAGGAACGCCGAGTTCGTCTTCGTCGTCGTTCGGCGGTGGTAGTGGACGGAGAGTGGTGGTTTTGGAGGAGGAGGAAGGGAAGGAGTGGGTGGCTCAAGTGGAGCCTGGCGTTTTGATTACTTTTGTGTCGCTTACTCGTGGCGGGAATGATCTAAAGCGGATACGGTTCAGTCGCGATACATTTAACAAATGGCAAGCTCAAAGATGGTGGGCAGAGAACTATGACAAAGTCATGGAACTTTACAATGTTCAAAGGCTTAACCGCCAAGCTTTCCCGTTACCAACTCCAGCAAGATCTGAAGATGAGAGTTCAAAGCGTGAATCAATAGCAGACAGCCCTGTGACACCTCCACTGACCAAGGAACAACTATCGCGCAATTTATACCGACCAACAGGAATGGGAATGGGATATTCATCCTCAGATTCCTTTGATCAACACTCAATGCAGTCCAAACATTATCAGTATGATTTAAGTGGCATGAACTCAACTCCAAAGGTTTCAACCATTAGTGCTGCAAAGACAGATATATCATCCATGGCTGCTTCTATAAGAAGTAGCTCTTCCAGAGAAGCTGATCGCTCTGGCGATTTATCAATGAGCAATGCTAGTGATCCGGATAGTGAATGGGTTGAGGAGGATGAACCTGGTGTTTACATTACTATTAGGTCTTTACCAGGTGGTAAAAGGGAGATCAGAAGAGTCAGGTTCAGTCGAGAAAAATTTGGCGAGGTTCATGCAAGACTATGGTGGGAAGAGAACCGTGCCAGAGTACATGAACAATACTTGTGA 1086 0.4705 MLTCIARPKKLGDDSLSHGDDSDSNNNAKNVKSLTCQIKDMALKASGVYKHCNPCAPASRVRNGGNGNSESETDSEKFRRTRTWGKEMEARLKGISSGEGTPSSSSSSFGGGSGRRVVVLEEEEGKEWVAQVEPGVLITFVSLTRGGNDLKRIRFSRDTFNKWQAQRWWAENYDKVMELYNVQRLNRQAFPLPTPARSEDESSKRESIADSPVTPPLTKEQLSRNLYRPTGMGMGYSSSDSFDQHSMQSKHYQYDLSGMNSTPKVSTISAAKTDISSMAASIRSSSSREADRSGDLSMSNASDPDSEWVEEDEPGVYITIRSLPGGKREIRRVRFSREKFGEVHARLWWEENRARVHEQYL* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3058 361 MobiDBLite consensus disorder prediction 72 93 - -
Psa1g3058 361 ProSiteProfiles BRX domain profile. 126 181 IPR013591 -
Psa1g3058 361 Pfam Transcription factor regulating root and shoot growth via Pin3 306 360 IPR013591 -
Psa1g3058 361 Pfam Transcription factor regulating root and shoot growth via Pin3 126 180 IPR013591 -
Psa1g3058 361 MobiDBLite consensus disorder prediction 191 224 - -
Psa1g3058 361 Pfam Transcription factor BRX N-terminal domain 31 55 IPR027988 -
Psa1g3058 361 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 361 IPR044532 -
Psa1g3058 361 PANTHER PROTEIN BREVIS RADIX-LIKE 4 1 361 - -
Psa1g3058 361 MobiDBLite consensus disorder prediction 97 112 - -
Psa1g3058 361 ProSiteProfiles BRX domain profile. 306 361 IPR013591 -
Psa1g3058 361 MobiDBLite consensus disorder prediction 278 304 - -
Psa1g3058 361 MobiDBLite consensus disorder prediction 62 113 - -
Psa1g3058 361 MobiDBLite consensus disorder prediction 278 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3058 Psa-Chr1 266483204 266490126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3058 1 361 Major Intrinsic Protein MIP AT1G31880 44.118 3.98e-87 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3058 - - gmx:100794109 485.337