Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3053 ATGGCATCCAATTCCAACGCCACCAACACGCTACTTTCCATTTCCTACAACCACGGTTCTCTTCAGCTTCTCGATCAGAGGAAGCTTCCTTTAGAAAGCGTTTACTTGGAAATTCGGGATTCAAACGATGGCTGGAATGCTATACGAGATATGGTGGTCCGAGGAGCACCTGCTATTGCTATTGCTGCAGCTCTCTCTCTGGCTGTAGAGGTATCCAATTTAGATGATTTCAATGGATCTACTGATGATGCTGTATACTTCCTGCAGAAGAAGTTGGACTATCTTGTCTCGAGTCGGCCAACCGCGGTGAACTTATCAGATGCTGCGACAAAACTCAAAGAAATCATATTGAAAGCTGCTGCTACAACTTCAGAGGCTAGGGCTTCCGAAATAATGCTTGAGGACGATGTTGCATCGAACAAAGCAATTGGGACTTATGGAGCTAAATTTATTCAAAACCACACAGAGAAACAAAAGCTTTCTGTTTTGACCCATTGCAACACTGGAAGTTTAGCCACAGCTGGATATGGTACTGCTCTTGGTGTAATCCGTGCCCTTAACAGTGGAGGAGTTTTAGAAAGGGCTTATTGTACGGAAACACGCCCATTCAATCAAGGATCCAGACTTACTGCCTATGAGTTGGTACATGAAAAAATACCAGCAACTCTCATAGCAGATTCTGCTGCAGCTGCACTAATGCAAGCAGGTCGTGTGGATGCTGTTGTTGTTGGTGCAGATCGTGTTGCATCAAACGGTGACACGGCCAACAAAATTGGAACCTATAGTGTTGCCTTATGTGCCAAGTTTCATAATGTACCTTTTTATGTTGCTGCACCCTTGACTTCCATTGATCTATCACTTTCTTCTGGGCAACAAATTGTCATTGAGGAGAGATCTCCCAAGGAGTTGTTGAACTCACGCGGAGGACTCGGAGAGCAAGTTGCTGCCTCAGGAATATCTGTGTGGAATCCGGCGTTTGATGTTACACCTGCTAATCTAATTTCTGGGATCATCACTGAGAAGGGTGTCATTACAAAGACTACTGCTGGTGACGCTTTTGACATAAACGCTTTCGTACAGAAAACAGAATTCAATCGTCTTGCGCTCCCTAGATTTTGGAAGTTATTTGAAAGTCGCCTCCGTGGAATTGGATTAAATTCAATTGTGACAGATGCTTATTTAGGAAATTTGGGTCCATCTGCTTGTGATGGTATTGCTAGAGACTCTGATGGAAGGTTTCTTGGAGCTTTTGTACGTTTTTTTGGTGTCTCTAACTCTTTCATTTTTGAATTCTTCGGTGCTATGTTAGCAATTGAGTTCGCTTATGAGAAAGGTTGGCGGAAAATTTGGTTAAAATCAGATTCTATAACTGTGGTTCAAGCATTCAATCCTCCTTTCAAAGCGTCTTGA 1410 0.4312 MASNSNATNTLLSISYNHGSLQLLDQRKLPLESVYLEIRDSNDGWNAIRDMVVRGAPAIAIAAALSLAVEVSNLDDFNGSTDDAVYFLQKKLDYLVSSRPTAVNLSDAATKLKEIILKAAATTSEARASEIMLEDDVASNKAIGTYGAKFIQNHTEKQKLSVLTHCNTGSLATAGYGTALGVIRALNSGGVLERAYCTETRPFNQGSRLTAYELVHEKIPATLIADSAAAALMQAGRVDAVVVGADRVASNGDTANKIGTYSVALCAKFHNVPFYVAAPLTSIDLSLSSGQQIVIEERSPKELLNSRGGLGEQVAASGISVWNPAFDVTPANLISGIITEKGVITKTTAGDAFDINAFVQKTEFNRLALPRFWKLFESRLRGIGLNSIVTDAYLGNLGPSACDGIARDSDGRFLGAFVRFFGVSNSFIFEFFGAMLAIEFAYEKGWRKIWLKSDSITVVQAFNPPFKAS* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3053 469 Pfam Initiation factor 2 subunit family 53 345 IPR000649 GO:0044237
Psa1g3053 469 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 9 360 - -
Psa1g3053 469 Gene3D - 10 192 IPR027363 -
Psa1g3053 469 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 39 346 IPR011559 GO:0044249
Psa1g3053 469 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 9 360 - -
Psa1g3053 469 Pfam Reverse transcriptase-like 396 463 IPR002156 GO:0003676|GO:0004523
Psa1g3053 469 SUPERFAMILY Ribonuclease H-like 392 464 IPR012337 -
Psa1g3053 469 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 13 346 IPR005251 -
Psa1g3053 469 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 11 355 IPR005251 -
Psa1g3053 469 Gene3D - 387 469 IPR036397 GO:0003676
Psa1g3053 469 Gene3D - 193 357 IPR042529 -
Psa1g3053 469 SUPERFAMILY NagB/RpiA/CoA transferase-like 10 347 IPR037171 -
Psa1g3053 469 CDD RNase_H_like 390 463 IPR044730 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3053 Psa-Chr1 266015936 266022965 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3053 50 365 Eukaryotic Initiation Factors Gene Family AT2G05830 74.769 7.59e-161 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3053 K08963 - gmx:100799311 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3053 1 266015936 266022965 Psa1g3053 1 266015936 266022965 ECH