Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3049 ATGGAGAAGAAATCACCGTTACCGTTGAACAACGCCATTGCGAACAAGAAGAAAGAGCAACTGTGTAGCAAGGAATCTCTTGTGAAGATTTTAAGATGGCATTTTAGGTATCCTGATTTTAGGGGTATGCAATTGGAAGCTATTCAAGCTGTGCTCTCAGGAAGAGATTGTTTTTGTCTTATGCCAACTGGAGGTGGAAAGTCAATGTGTTATCAAATCCCTGCATTGGCAAAAACAGGAATCGTGCTAGTAGTTTGTCCTTTAATAGTGCTGGCAGCCTTAATGGAAAACCAAGTAATGGCGCTAAAGGAGAAAGGAATTGCTGCAGAGTTTCTTTCATCAACAAAAACGGCAGATGCAAAAAACAAGATTCACGAGGACCTTGATTCTGGAAAACCATCTATAAGGCTGCTATATGTGACTCCAGAGTTGATAGCAACCCCAGGGTTTATGTCAAAGCTGAAAAAGATTTATTCCAGGGGGTTGCTAAGTCTCATTGCAATTGACGAGGCACATTGCATCTCTTCTTGGGGCCATGATTTCAGACCTAGCTACCGTAAGCTTTCAACTCTAAGAAGCCACCTACCAGATGTACCAATATTAGCTCTGACTGCTACTGCTGTTCCTAAGGTTCAGAAGGATGTAGTGGACTCCTTACAGATGCAAAATGCATTAATGTTAAAGACTTCTTTTAATCGTCCTAATATATATTATGAAGTTAGATATAAAGATCTACTGGAAGATGCTTATGCTGATTTATCTGATACACTCAAATCTATGGGAGATGTCTGTGCCATAATTTACTGCCTTGAACGTTCCATGTGTGATGACTTGTCAGCTCATCTATCTCAAAGTGGCATTTCTTGTGCTGCTTATCATGCAGGACTGAATAATAAAATGCGAACTTCCGTGCTAGATGATTGGATTTCTTCAAAATCAAAAGTTGTTGTTGCCACTGTTGCTTTTGGGTATGGCATTGATAGAAAGGATGTGAGAATTGTGTGCCACTTCAATATTCCGAAGTCAATGGAAGCATTCTATCAAGAGTCAGGCAGAGCTGGTCGTGATCAGTTGCCCTCTACAAGTCTCTTGTACTACGGATTAGATGATCGCAAAAGAATGGAATTTATATTAAGAAACTCAGGTAGCAAGAAGTCACAATCATCAAATTCACAAGAATCAACCAGAATGTCCCTGACTGCTTTCAATCAGATGCTTGAATATTGTGAAGGATCTGGATGTCGTAGGAAAAAGATTCTCGAGAGTTTTGGAGAGCAGGTAACAGCATCACTATGTGGAAAAACATGCGACTCCTGTAGACACCCAAACTTAGTTGCCAGAAATTTGGAGGATCTCACGGCTGCTTGTTCTCTACGCCAGAAAGGAGGTTCTCGGGTTTTCATCACCAGTTCCACTGATGCAATTGTTGGAGAACAGTTATCTGAATTCTGGAATCGAGACGAGGAAGCAAGTGGATCAGAGGAAGATATTTCTGACTTAGATGGTAAGGGTAATGAGGTTGTCAACAATCTAGCCCGGTCAAAGGCTCAATCTAGACTGGGAATAAATGAAAAGCTTGATTTGCTACAGAGGGCAGAAGAAAAGTACTATCGAAATGAGAACACCAATAAACAGAGCAATAAAGTGGACAAGAATGCTATTTCTGATGCATTACGAGGGTCAAGCAGGCAGAGATTACAAAATGCTTTAAAACAGGCTCAGGAACGGCTTGGCGACTCTAAGATTGAAATGGAAGCTTCGGCATCTCTTCTCGAAGATGAATGCTACAAGAAATATGGCAAGACCGGCAAATCATTCTATTATTCCCAAGTGGCAAGTACTATCAGGTGGTTGACAACTACAAATTCCGACAATCTAATGAACCGACTTCGTGCAGTTGATGTTTCCTCATCATTGAATGTCATCTCTGAAGTTGAACATTCCCTCACACCACCACCTGCTTCAGCTCCTTGTGCAAAAGATGAAACTAGCAATGAGGTCTCAGGCAATGCTGCGACAGAAATAATCCCATCTGATGTGCCAATAGAAAATTCTTTTAATACAAACTTACCGCCGATACCATCCTTCTCTGAATTCGTAAACAGTAGGAAAGCGAAAAGGGACCAATCAGGTGACACAAAAAAACACTCATCAAGAGTAGAAAAGAAGACGAGGATACAATAG 2184 0.4098 MEKKSPLPLNNAIANKKKEQLCSKESLVKILRWHFRYPDFRGMQLEAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKTGIVLVVCPLIVLAALMENQVMALKEKGIAAEFLSSTKTADAKNKIHEDLDSGKPSIRLLYVTPELIATPGFMSKLKKIYSRGLLSLIAIDEAHCISSWGHDFRPSYRKLSTLRSHLPDVPILALTATAVPKVQKDVVDSLQMQNALMLKTSFNRPNIYYEVRYKDLLEDAYADLSDTLKSMGDVCAIIYCLERSMCDDLSAHLSQSGISCAAYHAGLNNKMRTSVLDDWISSKSKVVVATVAFGYGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGLDDRKRMEFILRNSGSKKSQSSNSQESTRMSLTAFNQMLEYCEGSGCRRKKILESFGEQVTASLCGKTCDSCRHPNLVARNLEDLTAACSLRQKGGSRVFITSSTDAIVGEQLSEFWNRDEEASGSEEDISDLDGKGNEVVNNLARSKAQSRLGINEKLDLLQRAEEKYYRNENTNKQSNKVDKNAISDALRGSSRQRLQNALKQAQERLGDSKIEMEASASLLEDECYKKYGKTGKSFYYSQVASTIRWLTTTNSDNLMNRLRAVDVSSSLNVISEVEHSLTPPPASAPCAKDETSNEVSGNAATEIIPSDVPIENSFNTNLPPIPSFSEFVNSRKAKRDQSGDTKKHSSRVEKKTRIQ* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3049 727 CDD DEXHc_RecQ 29 232 - -
Psa1g3049 727 MobiDBLite consensus disorder prediction 648 669 - -
Psa1g3049 727 SMART helicmild6 276 357 IPR001650 -
Psa1g3049 727 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 4 711 - -
Psa1g3049 727 Pfam DEAD/DEAH box helicase 43 212 IPR011545 GO:0003676|GO:0005524
Psa1g3049 727 MobiDBLite consensus disorder prediction 701 727 - -
Psa1g3049 727 CDD SF2_C_RecQ 233 366 - -
Psa1g3049 727 Gene3D - 233 458 IPR027417 -
Psa1g3049 727 Coils Coil 563 583 - -
Psa1g3049 727 Gene3D - 3 232 IPR027417 -
Psa1g3049 727 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 711 - -
Psa1g3049 727 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 29 453 IPR004589 GO:0004386|GO:0006310
Psa1g3049 727 MobiDBLite consensus disorder prediction 697 727 - -
Psa1g3049 727 Pfam Helicase conserved C-terminal domain 261 355 IPR001650 -
Psa1g3049 727 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 256 397 IPR001650 -
Psa1g3049 727 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 225 IPR014001 -
Psa1g3049 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 378 IPR027417 -
Psa1g3049 727 Pfam RecQ zinc-binding 369 440 IPR032284 -
Psa1g3049 727 SMART ultradead3 36 241 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3049 Psa-Chr1 265758767 265766776 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3049 24 380 Eukaryotic Initiation Factors Gene Family AT3G19760 22.788 1.57e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3049 - K10901 gmx:100819601 1149.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3049 1 265758767 265766776 Psa1g3049 1 265758767 265766776 ECH