Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3033 ATGGCGATAAAGAAGTATTTCTGCGAATATTGCGAAAAGCAATTTCAAGACACACCGTCGGATCGGAAACGCCACGCCGCAGGCAGTCAACACAAACAAGCCAAAGCACGTTGGTACGATTCCTTCAAACCCCAACACCACAACCCTATTCCACACCAACCTAATCAACCCTTCTGCTTTCACTTCGTCAACAAGGGATTTTGTCGTTACGGAGATTCTTGCAAATATTTTCATCCCAATACGCAGCAACAGCAACCAATCACAACCGCGCCACCAGGGAATGTAGGAGTGTCGTTCGGCAATTTGCCTCCGTCGTTGCAACCTCCGCCTGAAGGTGGATACCCCTACACTCCCTTTGTCGACTGGGGGTAG 372 0.4946 MAIKKYFCEYCEKQFQDTPSDRKRHAAGSQHKQAKARWYDSFKPQHHNPIPHQPNQPFCFHFVNKGFCRYGDSCKYFHPNTQQQQPITTAPPGNVGVSFGNLPPSLQPPPEGGYPYTPFVDWG* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3033 123 PANTHER NUCLEASE-RELATED 1 123 - -
Psa1g3033 123 Pfam U1 zinc finger 3 39 IPR013085 GO:0008270
Psa1g3033 123 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Psa1g3033 123 SUPERFAMILY beta-beta-alpha zinc fingers 4 53 IPR036236 -
Psa1g3033 123 Gene3D Classic Zinc Finger 3 52 - -
Psa1g3033 123 Gene3D - 53 94 - -
Psa1g3033 123 SUPERFAMILY CCCH zinc finger 55 82 IPR036855 GO:0046872
Psa1g3033 123 MobiDBLite consensus disorder prediction 16 35 - -
Psa1g3033 123 SMART c3hfinal6 53 80 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3033 50 86 C3H Transcription Factor Family AT1G04990 45.946 4.77e-06 42.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa1g3033 zf-U1 1.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3033 K13152 - gmx:100527203 180.644