Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3018 ATGGGTCGTGCTAAAATAAAGATGAAATTCATCGAAAATCAAAAAGCTCGGAAAATAGCATTCATTCAGAGGCAGAAAGGATTAATAAAAAAAGTATCTGAATTTTCTAGAAAGTTTGGAGTTGAAGCCTGTTTAGTTATGTATGATGGCGATGATGGTAATGTTAGACCGATAATTTGGCCACAAGACTCAACAATTGTACACACATTGCTTAAAAAGTATGAGCAACAAAAGATTGAGACGACTCCAAAGAAGTTTGATATGAGTGACTATTTTGCGAATAGGAAAATTATGGTTGAAGCTGAGATTTTTAAATTGCGCAAAAAGATTGTGATTAACAAGTATCCAACATGGAGTTCATGTTTCCATACTATGGACGTAGAACAACTTAAAGACTTCGTTGGTATTGTAGATGTTAAGATTCAAACTTGTAATCACAAAATCAACATGCTGAAAAATATGCAACAAACTGAGAAAAATAGTTTGATGCAAAATAAAACTCAAGAGAATGTGGCCTCTTCACTCCCAAGTCAACTTGATGTCACAAATAGTATTCCTCAAATGCAACATATCTCTGATGATCCTATGGTTTCATCAACAAATCAAATTAATGAACCTCCAAAGATAGATGATAGGATGGTTGAATCTCATCAAGAATGGGCTAATCAACTTGATGAATTTCTACAACTAGATGATCCGGTGGCTAAACCTGAGAATCAGACTTCTGACCTTGCCAATTTTGAAGAATGGGCTAATCAACTAAATGGTGATATTGTGAATTGGAATAATCAGCCTGATTTGTATGCATGGCAAGATATTTCATTTATGCCATAG 834 0.3429 MGRAKIKMKFIENQKARKIAFIQRQKGLIKKVSEFSRKFGVEACLVMYDGDDGNVRPIIWPQDSTIVHTLLKKYEQQKIETTPKKFDMSDYFANRKIMVEAEIFKLRKKIVINKYPTWSSCFHTMDVEQLKDFVGIVDVKIQTCNHKINMLKNMQQTEKNSLMQNKTQENVASSLPSQLDVTNSIPQMQHISDDPMVSSTNQINEPPKIDDRMVESHQEWANQLDEFLQLDDPVAKPENQTSDLANFEEWANQLNGDIVNWNNQPDLYAWQDISFMP* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3018 277 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Psa1g3018 277 PANTHER MADS BOX PROTEIN 3 261 - -
Psa1g3018 277 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Psa1g3018 277 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Psa1g3018 277 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Psa1g3018 277 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Psa1g3018 277 PANTHER PROTEIN, PUTATIVE-RELATED 3 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3018 Psa-Chr1 264303525 264304358 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3018 1 142 Type I MADS-box Gene Family AT5G55690 30.822 1.86e-16 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa1g3018 SRF-TF 7.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3018 - - cam:101495285 257.684