Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3007 ATGACCTTCATGAAAACCATGTTAAAATCGATTCTTCCTTCAACTTGTTTCCAAGGAGAGTATCCATCACCAAAGCCAAAGAAAGTTGTATCAACAAAACCAAGAAACTCATCAACATCAACATCAACTCATAGGATTTCTATAGAAGATTTGAGTTATCCAAACACGACTTTATCAGAAGATTTGTCTATGTCTCTTTCTCTAGCAGGGTCTAATCTCTATAAGTTTACGGTTCTTGAACTTAAAGCTATAACACAGCACTTTTCTTCGAGTAATTTTCTCGGTGAAGGTGGGTTCGGACCGGTTCATAAAGGGTTTATCGATGATAGGGTTAGACCCGGTTTGAAAGCTCAACCCGTTGCTGTTAAACTCTTGGACTTGGAAAGCAAACAAGGTCACAAAGAGTGGTTGACTGAAGTTGTTGTTCTTGGACAATTAAGGCATCCACATGTTGTGAAGCTAATAGGATATTGTTGTGAAGATGAACATAGACTTTTGGTGTATGAATATTTACCAAGAGGAAGCTTGGAAAATCAATTATTTAGAAGATTCACAGCATCATTGCCATGGTCAACAAGAATGAAAATTGCTGTTGGAGCTGCAAAAGGTTTAGCATTTCTTCATGAAGCTGAGCAACCAGTTATTTATAGAGATTTCAAAGCTTCAAACATCTTGTTAGACTCTGACTATAATGCAAAACTCTCTGATTTTGGATTGGCAAAAGATGGACCTGAAGGAGATGACACCCACGTTTCAACAAGAGTTATGGGTACTCAGGGCTATGCTGCACCAGAATATGTCATGACAGGTCACTTGACAGCTAAGAGTGATGTGTATAGCTTTGGAGTTGTTTTATTGGAATTGCTAACAGGGAGAAAGTCAGTGGACAAAACCCGTCCTACAAGGGAACAAAACCTAGTTGATTGGGCAAGACCAATGTTAATGGATTCAAGAAAACTTGGCAAAATAATGGATCCAAAACTTGAAGGACAGTATTCTGAAATGGGTACTAAAAAAGCAGCTTCATTGGCGTATCAATGTCTTAGCCATAGGCCCAAGAGTAGGCCCACAATGAGCAATGTGGTTAAGATATTGGAACCTCTACAAGATTTTGATGATATTCCAATTGGACCCTTTGTTTACACTGTTCCAGTTGATAATAATGAAGTGGTTAAAGAAAAAGATCAAGCAAAGGAAGATGAATCGACCAAGGAGAGGAAAAGAGAAAACGGTCAATATCATAGGAACGGTCATAGGCATCATCCACTTAAATCTCCTAGGTCGCCGATGCCTCAATCACAATCAAGGCCGCAGTCACAGCCACGGCCTCGTGTGCGGATTGATAGGCATCAAAATGGTAGAGGAAGTGTGTTGAATTCTCCTTCTCCTCGTGTGCAATTTGACATGCATCAAAATGGTAGAGGAAGTGCGTCGAATTCTCCTACTCCTTCGCCACATCAAAAAAGCTATGAAACTTAG 1479 0.3982 MTFMKTMLKSILPSTCFQGEYPSPKPKKVVSTKPRNSSTSTSTHRISIEDLSYPNTTLSEDLSMSLSLAGSNLYKFTVLELKAITQHFSSSNFLGEGGFGPVHKGFIDDRVRPGLKAQPVAVKLLDLESKQGHKEWLTEVVVLGQLRHPHVVKLIGYCCEDEHRLLVYEYLPRGSLENQLFRRFTASLPWSTRMKIAVGAAKGLAFLHEAEQPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYVMTGHLTAKSDVYSFGVVLLELLTGRKSVDKTRPTREQNLVDWARPMLMDSRKLGKIMDPKLEGQYSEMGTKKAASLAYQCLSHRPKSRPTMSNVVKILEPLQDFDDIPIGPFVYTVPVDNNEVVKEKDQAKEDESTKERKRENGQYHRNGHRHHPLKSPRSPMPQSQSRPQSQPRPRVRIDRHQNGRGSVLNSPSPRVQFDMHQNGRGSASNSPTPSPHQKSYET* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3007 492 SUPERFAMILY Protein kinase-like (PK-like) 70 366 IPR011009 -
Psa1g3007 492 MobiDBLite consensus disorder prediction 23 44 - -
Psa1g3007 492 Pfam Protein tyrosine and serine/threonine kinase 92 365 IPR001245 GO:0004672|GO:0006468
Psa1g3007 492 MobiDBLite consensus disorder prediction 391 412 - -
Psa1g3007 492 PANTHER OS01G0588500 PROTEIN-RELATED 30 424 - -
Psa1g3007 492 MobiDBLite consensus disorder prediction 427 441 - -
Psa1g3007 492 ProSiteProfiles Protein kinase domain profile. 88 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g3007 492 Gene3D Phosphorylase Kinase; domain 1 51 170 - -
Psa1g3007 492 MobiDBLite consensus disorder prediction 30 44 - -
Psa1g3007 492 Gene3D Transferase(Phosphotransferase) domain 1 171 374 - -
Psa1g3007 492 CDD STKc_IRAK 94 368 - -
Psa1g3007 492 MobiDBLite consensus disorder prediction 453 492 - -
Psa1g3007 492 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 30 424 - -
Psa1g3007 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Psa1g3007 492 MobiDBLite consensus disorder prediction 391 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3007 Psa-Chr1 263835040 263837906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3007 15 365 Glycoside Hydrolase AT3G07070 46.648 3.25e-101 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Psa1g3007 PK_Tyr_Ser-Thr 2.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3007 - - cam:101488466 748.043