Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3002 ATGGAACAACAAAAAACCGTGAAAAACAACAAAACAACAAATAACGAGGTTGTTCTTCGAATTTCAAACAACCAAGAAATCAGAGATTTTGGAGCTACCCAAGTTGCCGAAACCAGTTCTCATTCAGAAGGGTCACATGCAGAAGAACTCATAGAGCTTGAGAATGTCAGAAGCAGTTTCTTGGGTCGGTCTGAATTTTCAAAGCCAAAAGCAAGAATGGTGGAACCACCATTACCAAAAGATGCAAGCTTTGTAGCAGAAAAGACTCAAATCAAGAATTCCAATTCTCCAAACAAGAAGGTTCTTCCAAGAGATGTTCCTGATGGAATTGGAACTGTCATTACCCCAAGAACTCCATTGATTGGTACTCCAAGGGAAGGAGAAGAAGTGGATGATGATGATGATGAAGAAGAAGTTTACAAGACTGCAGAAATTGAAGTGAGTAAGAGATCTGGTAAGAAGATGAAACTAATGAGTTGGATTGAGTTATTTGCATTTGTTTCAATTTTGGGTTTTTTGATTGCAAGCTTAATGGTTCATAATCTGCAACATAAGAAAATTTGGAGTTTAGAACTTTGGAAATGGTGTGTGCTTACATTAGTTATCATCTCTGGTAGATTAGTCACTAGCTGGTTTATCAATGTTCTGGTTTTCTTAATCGAAAGAAACTTCTTGTTTAAGAAGAAAGTCTTGTATTTTGTTTATGGTGTTAGGAAGAGTGTTCAAGCTTTTATATGGTTAAGTTTGGTACTTTTGGCATGGAGTTTAGTTTTCCACCATGGAGTTAAGAGAACAAGAAAAGTTACTAGGATTCTTGGTTACATCACAAGGGCACTTGCTTCTTTTGTTATTTCCGCGGCTATATGGTTGGCGAAAACTTTGTTGATTAAGCTATTGTCTTCGCATTTTCAATCGACTAGGTTTTTCGATAGGGTTCAAGAATCGATTTTTCATCAGTATATTCTTAGGACTCTTTCTGGTCCTCCTTTGATGGAGATGGCGGAGATGGTAGGCAAGAGTTCGAGTAGTGGCCGGCTTAGTTTCAAGACGTTGGTTAGAGATAATGAGAAGAAAGGGACGAAAGAACAAGTCATCGATGTAGAGAAGCTTAAGAAAATGAAACAAAAGAAAGTTTCGGCTTGGACTATGAAAGGATTGGTTGATGTAATTAAGAGTTCTGGATTATCTACCATTAGCTATACGCCGGAGAGTATATATGAAGAAGAGAGTGATCAAAAAGATAATGAAATTACTAGTGAATGGGAAGCAAAGGCGGCCGCGTATCGAATTTTCCGAAATGTTGCCAAGCCAGGAAGCAAGTACATTGAGAAGGAAGATCTTTTGCGGTTTATGAAAATCGAAGAAGTGGAAAATTTGCTTCCATTATTTGAGGGAGCAGTCGAGACCGGAAGAATTAAGAGGAAGTCTCTCAAGAACTGGCTGGTGAAAGTCTACCTAGAACGCCGATCTCTTGTACATTCGCTAAATGATGCCAAAACAGCTGTTGATGAATTGAATAACATTGCTTCCGCAATCGTCCTTATTTTGGCCATCATTGTGTTGTTGCTTGTGATGGGATTCTTAACAACCCAAGTTCTTGTCTTCATTTCATCACAGCTTTTACTTGTGGCGTTTGTGTTTGGCAACACGGCTAAGACAGTATTTGAAGCTATTATATTTGTTTTCGTGATGCATCCGTTCGATGTCGGTGATCGTTGTGTCATCGATGGTGTTCAGATGATTGTAGAAGAGATGAATATATTGACTACAATATTTTTGAGATACGACAATGAAAAGATATTCTATCCGAATTCAGTTCTTGCGACCAAGCCAATAAGTAACTTCTATCGGAGTCCAGAAATGAGTGATTCAGTTGAATTTTCTGTTGATGTTTCGACTTCAATACAAAGCATTGGAGCTTTAAAAGCTAGATTAAAAGAATACTTGGAGAGTAGGCCACAACATTGGCGTCCAAACCACAGTGTATTGGTTAAGGATATTGAGAATGTAAACAAGATGAAAATGGTTCTTTACGTTACTCACACGATAAACTTTCAGAATTCGGGCGATAAGAACAACAGAAGATCTGAATTAGTTCTCGAGTTAAAGAGAATTCTTGAAGAGCTCGATATTAAATACAATTTGCTGCCTCAAGAAGTTCGTCTCAGTCATGTAAGATCACAAGACAATAAGGCAGAGACAGTTTGA 2208 0.38 MEQQKTVKNNKTTNNEVVLRISNNQEIRDFGATQVAETSSHSEGSHAEELIELENVRSSFLGRSEFSKPKARMVEPPLPKDASFVAEKTQIKNSNSPNKKVLPRDVPDGIGTVITPRTPLIGTPREGEEVDDDDDEEEVYKTAEIEVSKRSGKKMKLMSWIELFAFVSILGFLIASLMVHNLQHKKIWSLELWKWCVLTLVIISGRLVTSWFINVLVFLIERNFLFKKKVLYFVYGVRKSVQAFIWLSLVLLAWSLVFHHGVKRTRKVTRILGYITRALASFVISAAIWLAKTLLIKLLSSHFQSTRFFDRVQESIFHQYILRTLSGPPLMEMAEMVGKSSSSGRLSFKTLVRDNEKKGTKEQVIDVEKLKKMKQKKVSAWTMKGLVDVIKSSGLSTISYTPESIYEEESDQKDNEITSEWEAKAAAYRIFRNVAKPGSKYIEKEDLLRFMKIEEVENLLPLFEGAVETGRIKRKSLKNWLVKVYLERRSLVHSLNDAKTAVDELNNIASAIVLILAIIVLLLVMGFLTTQVLVFISSQLLLVAFVFGNTAKTVFEAIIFVFVMHPFDVGDRCVIDGVQMIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSVEFSVDVSTSIQSIGALKARLKEYLESRPQHWRPNHSVLVKDIENVNKMKMVLYVTHTINFQNSGDKNNRRSELVLELKRILEELDIKYNLLPQEVRLSHVRSQDNKAETV* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3002 735 Gene3D - 566 615 IPR023408 -
Psa1g3002 735 Pfam Mechanosensitive ion channel 506 712 IPR006685 GO:0016020|GO:0055085
Psa1g3002 735 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 10 725 - -
Psa1g3002 735 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 10 725 IPR016688 -
Psa1g3002 735 PIRSF Memb_At2g17000 2 733 IPR016688 -
Psa1g3002 735 SUPERFAMILY Sm-like ribonucleoproteins 556 615 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3002 Psa-Chr1 263412227 263415613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3002 57 723 Mechanosensitive Ion Channel Family AT5G12080 53.176 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3002 K22048 - gmx:100777332 1035.4