Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3001 ATGAAGCCTTTTCTATTTTTGAATCATTCTGATACCGAGTTCAATTCCTCACAAGTTGACATTAATTACTCAATGGCTCATGCTCCTTATCCTTACTGCGATCCAATTTTTTCTGGTCCATTAGTTGCTTATGCCCCGCAGGCTGCTAACCAACCCCAAATGTTACCTCAGATGATGGGATTACCATCCAATCGAGTTGCGTTACCACCCGATCTTGCACAAGATGGGCCCATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGACGACAGTCAAGAGCAAAGCTTGAGGCTCAGAACAAACTCATCAAATGTCGTAAACCATATCTTCATGAATCTCGGCACAAGCATGCTTTGAAAAGGGTTAGAGGATCCGGTGGGCGATTTCTCAGCACCAAACACCTTTCACAGTCTGGCACAGAATTTGTCACAGGTTCAAATACTGGCGCTGCCTCTATAAACAAATATCAAAAGGAAGATAATTCAGAGATGGGAAGTCATCATTCCTCAAAAACTGCCAATAACGAATCTTCCATCACAACCTGTTCCGACCGCACATGTTTTTCTGGTAACAGTTTCCATTTTAGGCAGCCAGAGCACATGTTTCTCGGGAACTCTCCAAACATGGGTGGAGGAGCACCACAATGCAGTGGAGGACTCGTGTTTGGGGGAACAAAACAACGTGCTTCGGTTCGGTGA 705 0.4411 MKPFLFLNHSDTEFNSSQVDINYSMAHAPYPYCDPIFSGPLVAYAPQAANQPQMLPQMMGLPSNRVALPPDLAQDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKCRKPYLHESRHKHALKRVRGSGGRFLSTKHLSQSGTEFVTGSNTGAASINKYQKEDNSEMGSHHSSKTANNESSITTCSDRTCFSGNSFHFRQPEHMFLGNSPNMGGGAPQCSGGLVFGGTKQRASVR* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3001 234 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 218 - -
Psa1g3001 234 Gene3D - 74 136 - -
Psa1g3001 234 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Psa1g3001 234 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Psa1g3001 234 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Psa1g3001 234 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 218 IPR001289 GO:0003700|GO:0006355
Psa1g3001 234 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Psa1g3001 234 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Psa1g3001 234 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3001 Psa-Chr1 263273310 263277167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3001 45 146 CCAAT-HAP2 Transcription Factor Family AT1G54160 66.346 1.13e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Psa1g3001 CBFB_NFYA 1.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3001 K08064 - gmx:100793856 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3001 1 263273310 263277167 Psa1g3001 1 263273310 263277167 ECH