Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2999 ATGTCGGTGAATCTCACGGCGAACGCTATTCCAGCGATAATCAACGGCGACGTTAACGCCAAACCGTTGCTACAAATTCTTGAGATTTCATCAGTCATAAGTAACAAAAACTCTCAGCAGCAGAGATACCGCGTCCTTCTCTCCGACGCCGTTTCATCTCACCACGCTATGCTCGCTGCTCAACTCAACGACCTAGTTACCACCGGACGTGTTAAGAATGGCTCCATCGTTCAGCTTCTCGATTACATATGCACTCTTTTCCAGAATCGCAAGATTATTATGGTCCTCAACATGGAATCCATAATACCTGATTGTGAGATCATTGGAAGTCCAAAGCCATTTGTGGATTCAGAATTACCAGTTCAGAAAGCATTGCGTGATAACACTGTGGGGAGTTCGATCAACAACAATAATAATAACAGTTATAATAATAATAGTAATATTTTGGCTGCTCAAAATACAGGTAGTACTAATGTGCAGAATTTCAGGCCAACAATTCAACCTTCATACAAACCTCCTCCGGTTTACAAAGGCCGTGGTGCTGTTATGAAAAACGAGGCGCCGGCACGTACAATACCGATAGCTGCTTTAAATCCATATCAAGGTAGGTGGGCAATCAGGGCAAGAGTTACTGCTAAAGGGGATTTGCGCCGGTATAACAATGCTCGTGGAGATGGAAAAGTCTTCTCGTTTGATCTCCTTGATTCTGATGGTGGTGAAATCCGCGTAACATGCTTTAATGCTATTGTTGACCGCTTCTATGATACAATTGAGGTTGGCAAAGTATACTTGATATCCAAAGGTAACTTGAAACCTGCACAGAAGAATTTCAACCATTTGAAGAATGAATGGGAAATTATGCTGGATTTGAATTCCACAGTTGAGCTTTGCCCAGATGAGGATGGTTCTATACCTAAACAGCAATTCTCCTTCAGGCCTATCAGTGACATTGAGAATGTCGAAAGTAATGCTATCCTTGATGTTATTGGGGTTGTGACATCTGTGAATCCTTCAGTTCCCATCTTAAGGAAGAATGGAATGGAAACGCTGAGAAGGATTTTGAATCTGAAGGACAATTCTGGCAGGAGTGTTGAGCTAACACTTTGGGGTGAATTTTGTAACAGGGAAGGACAAAAGCTGCAAGAGATGGTAGATGCTGGTGTTTTCCCCATTTTGGCAGTAAAGGCTGGGAAAGTGAATGAATTCAGTGGAAAGTCTATAGGCTCTATTTCCACTACTCAGCTTTTCATAAATCCAGATTTCCCCGAGGCTCAAAGCTTACGAGCCTGGTTTGATCAAGTTGGAAAAGATTCTGCTTCTCTATCCATTTCTAAGGACATTACTCATGGAGGACCGAAGAATGAGATACGCAAAACTGTGTCTCAAATCAGAGATGAAGGTCTGGGACGTTCAGACAAGCCGGACTGGATAACAATAAGGGCAACCATATCATTCATGAAGACTGATACATTCTGTTACACAGCTTGCCCTCTAATGATTGGAGATCGACAATGCAATAAGAAAGTGACAAGGTCAGGAGACACAAGATGGCAATGTGATAGATGCAACCAGGAATTTGAGGAATGCGATTATCGTTACCTTCTCCAAGCTCAAATTCAGGATCATACTGGATTAACTTGGGTAACTGCTTTCCAGGAAGGAGGAGAAGAGATTATGGGATACCCAGCAAAAGAGCTGTATGCACTGAAGTATGAACAGGAGGATGATGAAAGGTTTGGGGATATAGTCAAGAGTAGACTCTTCAATCACTTTGTATTTAGGCTGAAAATCAAAGAGGAATTATATGGGGAAGAACAGAAGGTGAAGAGCACAGTAGTTAAGGCAGATAAGGTGAATTATTCTGCAGAGAGTAGATACATGCTTGATTTGATTTCCAAGTTCGGTAGGAAGTAA 1914 0.4201 MSVNLTANAIPAIINGDVNAKPLLQILEISSVISNKNSQQQRYRVLLSDAVSSHHAMLAAQLNDLVTTGRVKNGSIVQLLDYICTLFQNRKIIMVLNMESIIPDCEIIGSPKPFVDSELPVQKALRDNTVGSSINNNNNNSYNNNSNILAAQNTGSTNVQNFRPTIQPSYKPPPVYKGRGAVMKNEAPARTIPIAALNPYQGRWAIRARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAIVDRFYDTIEVGKVYLISKGNLKPAQKNFNHLKNEWEIMLDLNSTVELCPDEDGSIPKQQFSFRPISDIENVESNAILDVIGVVTSVNPSVPILRKNGMETLRRILNLKDNSGRSVELTLWGEFCNREGQKLQEMVDAGVFPILAVKAGKVNEFSGKSIGSISTTQLFINPDFPEAQSLRAWFDQVGKDSASLSISKDITHGGPKNEIRKTVSQIRDEGLGRSDKPDWITIRATISFMKTDTFCYTACPLMIGDRQCNKKVTRSGDTRWQCDRCNQEFEECDYRYLLQAQIQDHTGLTWVTAFQEGGEEIMGYPAKELYALKYEQEDDERFGDIVKSRLFNHFVFRLKIKEELYGEEQKVKSTVVKADKVNYSAESRYMLDLISKFGRK* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2999 637 Gene3D - 3 115 IPR012340 -
Psa1g2999 637 SUPERFAMILY Nucleic acid-binding proteins 1 109 IPR012340 -
Psa1g2999 637 SUPERFAMILY Nucleic acid-binding proteins 308 435 IPR012340 -
Psa1g2999 637 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Psa1g2999 637 Gene3D - 190 300 IPR012340 -
Psa1g2999 637 SUPERFAMILY Nucleic acid-binding proteins 191 303 IPR012340 -
Psa1g2999 637 CDD RPA1N 9 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Psa1g2999 637 PANTHER REPLICATION FACTOR A 1, RFA1 2 631 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Psa1g2999 637 SUPERFAMILY Nucleic acid-binding proteins 457 634 IPR012340 -
Psa1g2999 637 CDD RPA1_DBD_C 460 633 IPR013955 -
Psa1g2999 637 CDD RPA1_DBD_A 193 296 - -
Psa1g2999 637 Gene3D - 303 442 IPR012340 -
Psa1g2999 637 Pfam OB-fold nucleic acid binding domain 205 285 IPR004365 GO:0003676
Psa1g2999 637 Gene3D - 443 634 IPR012340 -
Psa1g2999 637 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 633 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Psa1g2999 637 CDD RPA1_DBD_B 325 432 - -
Psa1g2999 637 Pfam Replication factor-A C terminal domain 476 626 IPR013955 -
Psa1g2999 637 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 631 - -
Psa1g2999 637 Pfam Replication protein A OB domain 314 418 IPR031657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2999 Psa-Chr1 263150049 263154164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2999 24 633 Core DNA Replication Machinery Family AT2G06510 68.608 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2999 K07466 - gmx:100792409 1024.62