Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2984 ATGGAACGTCGCGTTGGAAATAAGTATCGTCTTGTTCGTAAGATCGGTAGTGGCTCCTTTGGGGAGATCTATTTAGGTACTAATATTCAAACTAATGAAGAGGTTGGAGTTAAGCTTGAAAATGTCAGAACGAAGAATCCTCAGTTGCTGTATGAGTCCAAGTTGTACAGAATACTACAAGGAGAGCCTGGGATTCCAAATATTAAATGGTTTGGAGTGGATGGAGATTACAATGTTCTAGTAATGGATCTGCTTGGACCTAGTCTTGAAGAGATGTTTAACTTTTGTAATAGAAAGCTCTCGCTAAAGACAGTTCTCATGCTTGCAGAGCAAATGATCAAGCGTGTTGAGTTTGTTCATTCTAAATCGTTTCTCCATCGGGATATCAAACCAGATAATTTCCTCATGGGCTTGGGAAAGCGGGAAAACCAGGTTTACTGTATTGATTTTGGTTTAGCAAAGAAATATAGAGATAGTTCAACCCATCGACACATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACCCACCTTGGCATTGAGCAAAGTCGAAGAGATGATTTAGAGTCTATTGGTTATGTCTTGATGTACTTCCTGAGAGGAAGTCTCCCATGGCAAGGACTTCAAGCAAGAACCAAGAGAGAAAAGTACGAGAAAATCAGTGAAAAGAAGGTTTCTACTTCGATTGAGGCCTTGTGTCAAGGTTATCCAACAGAATTCGCATCATACTTCCATTATTGCCGGTCATTAAGGTTTGATGACAGACCAGATTATGCTTACCTCAAAAGAATATTCCGCGACCTGTTTATTCGTGAAGGATTCCAGTCTGATTACGTCTTTGATTGGACTATCTTGAAATATCAGCAATCACAGCTAGTCACTCCTCCAGCACGCGGCATTGGGCCCGGTGCCGGAACTAGTTCAGGAATGCCTCTTGCTATGACTAGTGCTAACCGACACACTGGAAGGGAAGATGGGCGTCCTCCTGGTTTGGTTTCAGGAGACTCTACAAGACGACGAATGTCGGGACCCATTTTAAATTCTGTAAATATTTCAAAGCAGAAAAATCCAGCCCCCAGCGATGCTGCTGTTAGTAAGGAGGTTATGTTATCAAATTCCAATGTCTTGGGTGAATCAAGTGGGTCATCAAGGCGTGTTGCTGATAGTAGTAGCCGCAATCCATTTGGTGGCGCAGATTCCGATCTTCGTTCTCGTGCTACCGAAGCTATCCGCGGAAAAGCACACATAAGTTCAAGTGGACAAAGAGGTTCACACATTGGATCCTCAGATCCAAATAGAGTAGCAACATCTTCTAATAACGGTTCTCATGTCAAGAATTATGAAACTGCAGTCAAGGGCATGGAGGGTTTGAAATTAAAAAATGTTGATTCCCATTAA 1422 0.4198 MERRVGNKYRLVRKIGSGSFGEIYLGTNIQTNEEVGVKLENVRTKNPQLLYESKLYRILQGEPGIPNIKWFGVDGDYNVLVMDLLGPSLEEMFNFCNRKLSLKTVLMLAEQMIKRVEFVHSKSFLHRDIKPDNFLMGLGKRENQVYCIDFGLAKKYRDSSTHRHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESIGYVLMYFLRGSLPWQGLQARTKREKYEKISEKKVSTSIEALCQGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQSDYVFDWTILKYQQSQLVTPPARGIGPGAGTSSGMPLAMTSANRHTGREDGRPPGLVSGDSTRRRMSGPILNSVNISKQKNPAPSDAAVSKEVMLSNSNVLGESSGSSRRVADSSSRNPFGGADSDLRSRATEAIRGKAHISSSGQRGSHIGSSDPNRVATSSNNGSHVKNYETAVKGMEGLKLKNVDSH* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2984 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Psa1g2984 473 Pfam Protein kinase domain 9 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2984 473 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Psa1g2984 473 MobiDBLite consensus disorder prediction 374 405 - -
Psa1g2984 473 Gene3D Transferase(Phosphotransferase) domain 1 1 305 - -
Psa1g2984 473 PANTHER CASEIN KINASE I-LIKE 1 458 - -
Psa1g2984 473 PANTHER CASEIN KINASE-RELATED 1 458 - -
Psa1g2984 473 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2984 473 MobiDBLite consensus disorder prediction 325 473 - -
Psa1g2984 473 MobiDBLite consensus disorder prediction 425 454 - -
Psa1g2984 473 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2984 473 MobiDBLite consensus disorder prediction 348 367 - -
Psa1g2984 473 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2984 Psa-Chr1 262592513 262598746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2984 7 213 EF-hand Containing Proteins AT2G17890 25.234 4.20e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Psa1g2984 Pkinase 2.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2984 K02218 - gmx:100785851 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g2984 1 262592513 262598746 Psa1g2984 1 262592513 262598746 ECH