Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2969 ATGGTTGATGATGATATCAATGATAAGTCTAGTTTGAATGAGTCGATGAAGAACGTGGCTTCTGTTGTGACGAACCACGAGAGTGGAGGTGGAAGTAAATCAGATGGTCCTGATTCAAAGCCAATTGCTGCGGTTCATGAGACGCTAGAGAAGCAAACAAGTATAACTAGCTGTGATAATGGTTTGGAATTGAGTGAAACTCCTCTTTATGGTTTCTCATCAGTTATTGGAAGGAGACAAGAGATGGAAGATGCTGTTGTTATTAAGCCTCAACTTTTTCAAGTACCTTCTATGATGCTAATGGAGGATCAAGTGAATGAAAACACAAAACACTCACTTGCACACTTTTTTGGTGTCTACGACGGACATGGAGGAAGTCAGGTTGCCAATTACTGCCAGAAACATCTTCATTCAGTTTTGGTTGAGGAGATAGAAGCTGCAGAATCCAGTTTATCTGAAAATAAAGAAAAAGACAATTGGCAGGACCGATGGAAGAAAGTACTAACCAATTGCTTTCAAAAAGTAGATGATAAGATTGTAGGAATTGATGAAGCTAATCGCGAAATGAGCGGTAATGATGGATCTGAGTCAAGTACTGAAGAAACTCTTGCTCCTGAGACTGTTGGATCCACTGCACTGGTTGCAATTTTGACTCAGTCCCACATAATAGTTGCGAATTGTGGCGATTCACGAGCGGCCTTGTGTCGAGGAAAAGAAGCACTGCCTTTGTCTACAGACCATAAACCAAATAGAGAAGGTGAGTGGGAAAGGATAGAAGCCGCTGGAGGAAAGATCATACAATGGAATGGATACCGAGTTCTCGGTGTTTTGGCAGTATCAAGGTCAATAGGCGATAAATACTTGAAACCATGGATAATTCCAGATCCAGAAGTCACAATCGCCCTCCGAGAGAAAAACGACGAATGTCTTGTTCTAGCGAGTGATGGTTTATGGGACGTGATGACCAATGAAGAAGCGTGCGAGATTGCTCGAAAGCGAATCCTTATTTGGCATAAGAAGAACGGAACCAATGCATCAGCCATACAAAGCGACCGAGTTAATCCTGCAGCTCAGTACGCTGCAGAGTATCTATCAAAACTTGCTCTTCAAAGAGGAAGCAAAGATAACATCTCAATTATTGTTATAGACTTGAAAGCTCAAAGACAAATCAAGAGAAAAGCATAA 1185 0.4152 MVDDDINDKSSLNESMKNVASVVTNHESGGGSKSDGPDSKPIAAVHETLEKQTSITSCDNGLELSETPLYGFSSVIGRRQEMEDAVVIKPQLFQVPSMMLMEDQVNENTKHSLAHFFGVYDGHGGSQVANYCQKHLHSVLVEEIEAAESSLSENKEKDNWQDRWKKVLTNCFQKVDDKIVGIDEANREMSGNDGSESSTEETLAPETVGSTALVAILTQSHIIVANCGDSRAALCRGKEALPLSTDHKPNREGEWERIEAAGGKIIQWNGYRVLGVLAVSRSIGDKYLKPWIIPDPEVTIALREKNDECLVLASDGLWDVMTNEEACEIARKRILIWHKKNGTNASAIQSDRVNPAAQYAAEYLSKLALQRGSKDNISIIVIDLKAQRQIKRKA* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2969 394 CDD PP2Cc 70 384 IPR001932 -
Psa1g2969 394 SMART PP2C_4 59 382 IPR001932 -
Psa1g2969 394 MobiDBLite consensus disorder prediction 1 38 - -
Psa1g2969 394 ProSitePatterns PPM-type phosphatase domain signature. 116 124 IPR000222 GO:0043169
Psa1g2969 394 ProSiteProfiles PPM-type phosphatase domain profile. 69 384 IPR001932 -
Psa1g2969 394 Pfam Protein phosphatase 2C 71 377 IPR001932 -
Psa1g2969 394 Gene3D - 58 394 IPR036457 -
Psa1g2969 394 SMART PP2C_SIG_2 100 384 IPR001932 -
Psa1g2969 394 PANTHER PROTEIN PHOSPHATASE 2C ABI2-LIKE PROTEIN 3 393 - -
Psa1g2969 394 PANTHER ALPHABET, ISOFORM E-RELATED 3 393 - -
Psa1g2969 394 SUPERFAMILY PP2C-like 68 385 IPR036457 -
Psa1g2969 394 MobiDBLite consensus disorder prediction 185 204 - -
Psa1g2969 394 MobiDBLite consensus disorder prediction 12 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2969 Psa-Chr1 261777132 261778885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2969 50 393 PP2C-type Phosphatase Gene Family AT4G26080 56.571 1.00e-136 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2969 K14497 - gmx:100812974 498.434