Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2968 ATGAAGAAAGGACGTTTAGATCCAAACCTCAAACTCACTGTTCCTGCATCTAATCAAGCTTCTTTTGCAAAGTTCTTGACTCAAAGTGGCACTTTTAAAGAAGGAAACTTGCTTGTTAATAAGGATGGAGTTAGAATTGTCTCTCAGAGTGAAGTTGAAACTCAACCACCAATAAAGCCAATAGACAATCAGATAAGTTTGGCAGAGATTGATACAATAAAAGTGATTGGAAAGGGAAATGGAGGGATAGTTCAATTGGTTCAACACAAATGGACTAATCAGTTTTTTGCATTAAAGCAAATTCAAATGAATCTTGAGGATTCTACTTGCAGGCAAATAGCACAAGAGCTAAAAATCAATCAATCAGCACAATGTCCTTATGTTGTTGTTTGCTACCAATCGATCTACGATAATGGCACGATATCGATCATCTTAGAGTACATGGACGGAGGCTCCTTAGAAGATCTATTGAACAAAGTTATAACGATTCCAGAACCGTTTCTTGCTGCCATTTGTAAGCAGGTGCTAAAGGGTTTGATGTATCTTCACCATGAGAAACACATTATTCATAGAGACTTGAAACCTTCTAATATACTTATAAATCATAGAGGGGAGGTAAAGATTACCGATTTCGGTGTCAGTATAATCCTGGAAACTACTTCTGGTCAAGCAAATACTTTCATCGGTACATACAACTATATGTCTCCAGAAAGAATCGCTGGAACTCAACAAGGTTACAATTACAAAAGTGATATATGGAGCTTGGGATTGATGTTGCTTAAGTGTGCAACTGGGAGGTTTCCATATACACCACCAGATAATAGTGATGGATGGGAAAGTTTGTTTCAGCTTATTGAAGCCATTGTTGAAAAACCTTCACCTAGTGCTCCATCTGATGAATGTTCACCCGAATTTTGCTCATTTATCTCCGCATGTTTACAGAAAAATCCGAGGGACAGACCATCGGCTCGAAACCTATTGAGGCATCCTTTCGTGAACATGTACGATGACTTAGATGTGGATCTTTCCGACTATTTCTCCAATGCAGGTTCTACACTTGCAACGATATAA 1071 0.3828 MKKGRLDPNLKLTVPASNQASFAKFLTQSGTFKEGNLLVNKDGVRIVSQSEVETQPPIKPIDNQISLAEIDTIKVIGKGNGGIVQLVQHKWTNQFFALKQIQMNLEDSTCRQIAQELKINQSAQCPYVVVCYQSIYDNGTISIILEYMDGGSLEDLLNKVITIPEPFLAAICKQVLKGLMYLHHEKHIIHRDLKPSNILINHRGEVKITDFGVSIILETTSGQANTFIGTYNYMSPERIAGTQQGYNYKSDIWSLGLMLLKCATGRFPYTPPDNSDGWESLFQLIEAIVEKPSPSAPSDECSPEFCSFISACLQKNPRDRPSARNLLRHPFVNMYDDLDVDLSDYFSNAGSTLATI* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2968 356 Gene3D Transferase(Phosphotransferase) domain 1 150 354 - -
Psa1g2968 356 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2968 356 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 356 - -
Psa1g2968 356 Pfam Protein kinase domain 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2968 356 SUPERFAMILY Protein kinase-like (PK-like) 55 339 IPR011009 -
Psa1g2968 356 PANTHER MAP KINASE KINASE 1 356 - -
Psa1g2968 356 CDD PKc_MAPKK_plant_like 68 336 - -
Psa1g2968 356 Gene3D Phosphorylase Kinase; domain 1 44 149 - -
Psa1g2968 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Psa1g2968 356 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Psa1g2968 356 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2968 Psa-Chr1 261773929 261776598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2968 27 353 MAP Kinase Kinase Gene Family AT4G26070 66.972 8.92e-167 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Psa1g2968 Pkinase 5.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2968 K20603 - gmx:100789734 573.163