Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2961 ATGGAAGGTGCTACTGGACCTCAGTACAACCCTCGCACCGTCGAAGCTGTTTTCCGGGATTACAAAGGTCGGCGAGCTGGTTTGATCAAGGCTCTCACCACTGATGTTGAGGACTTTTACCAGCAGTGCGATCCTGAAAAGGAGAATCTTTGTTTGTACGCATATCCCGGTGGGTCATGGGAAGTTACTTTACCTGCTGAAGAAGTTCCTCCTGAACTTCCAGAACCTGCATTGGGGATCAATTTTGCTAGGGATGGAATGCACGAAAAGGATTGGCTATCTTTAGTTGCTGTTCACAGTGACGCATGGCTACTCTCCGTGTCTTTCTACTTTGCTGCAAGATTTGGTTTCGGTAGATCTGAAAGGAAACGCCTTTTCACTCTGATTAACGATCTGCCAACAATATTTGAGGCTGTGACTGGATCTGCAAAGAAACAGGAAACGGACAAGCCATCCGTCTCGAGCCACAACAACTCAAAGCCTGGTTCAAAAGTGGAAAACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGAAGAAGAAGATGACGGGGTATTGGACGAAGAAGATGAGGAGCAAGGGGAGTGTGCTGCTTGTGGCGAGAGCTATGTATCTGCATCTGAGGAGTTCTGGATTTGCTGCGACGTGTGTGAGAAGTGGTACCATGGAAAGTGCGTGAAGATCACTCCTGCCCGAGCCGATCACATCAAGCACTACAAGTGTCCTGCATGCAACAATAAGAGATCTCGTCCTTGA 789 0.4689 MEGATGPQYNPRTVEAVFRDYKGRRAGLIKALTTDVEDFYQQCDPEKENLCLYAYPGGSWEVTLPAEEVPPELPEPALGINFARDGMHEKDWLSLVAVHSDAWLLSVSFYFAARFGFGRSERKRLFTLINDLPTIFEAVTGSAKKQETDKPSVSSHNNSKPGSKVENEEEEEEEEEEEEEEEEEEEEDEEEEDDGVLDEEDEEQGECAACGESYVSASEEFWICCDVCEKWYHGKCVKITPARADHIKHYKCPACNNKRSRP* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2961 262 Coils Coil 160 194 - -
Psa1g2961 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 262 IPR013083 -
Psa1g2961 262 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 7 262 - -
Psa1g2961 262 SUPERFAMILY FYVE/PHD zinc finger 199 260 IPR011011 -
Psa1g2961 262 MobiDBLite consensus disorder prediction 167 203 - -
Psa1g2961 262 Pfam PHD-finger 207 257 IPR019787 -
Psa1g2961 262 ProSiteProfiles Zinc finger PHD-type profile. 204 258 IPR019787 -
Psa1g2961 262 Pfam Alfin 13 140 IPR021998 GO:0006355|GO:0042393
Psa1g2961 262 SMART PHD_3 206 256 IPR001965 -
Psa1g2961 262 CDD PHD_AL_plant 207 258 IPR044104 -
Psa1g2961 262 PANTHER CPG BINDING PROTEIN 7 262 IPR045104 GO:0006355|GO:0042393
Psa1g2961 262 ProSitePatterns Zinc finger PHD-type signature. 207 255 IPR019786 -
Psa1g2961 262 MobiDBLite consensus disorder prediction 142 203 - -
Psa1g2961 262 MobiDBLite consensus disorder prediction 145 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2961 Psa-Chr1 261163616 261167547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2961 1 261 Alfin-like Transcription Factor Family AT3G42790 62.835 9.39e-104 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Psa1g2961 Alfin 6.6e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2961 - - tcc:18596192 360.147