Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2952 ATGCCTGATTTTCCCAAGATGGATCACAATACATCCGAAGAACGTTTTGACAAACGTTATAATACGCGTAGTTGTCCAAATTCAGGAAATACTTCACCAACTCATAACAAAAAGTTGAATCAAGAAAAAGATGGTTACACAAATGAATATTCTGCAAATGAAGCTACTAGACCTATGGAGCAAGGTTCTAAAACTGATGCAAAATTCGCAAATAAAACGAAACCGCAGAATCTAAGTCCTCCGAACAAAAACATGTCTGATGCTTTTTCGAGACAAAGTCCAAAGGCATCAAGGATGCCTTCAAATTCTGAACCTGCGACTTCGTTACTAACAGGAGTTTCAAAGGGTATGTCTAATCATACAAAGAATAATAGTCAAAGCGGCCTGCCCGGAAGTGGAACTAGCTCGCGAAGCGACAGTTTAGAGAGCACAAGTTCAAACATTAGGCCACATACTGGTGGTGATGTGAGATGGGATGCAGTTAACATGGTTTTGAAAAACGGTCCTTTGAATCTGAGCCATTTTCGGCTTCTTAAGCGTATCGGTTACGGAGACATTGGAAGTGTTTATCTTGTTGAACTTAAAGGAACTGATGCTCATTTTGCTATGAAAGTAATGGACAAGGCTGCTCTTATAAGTAGAAACAAGCTTCTTAGATCACAAACTGAAAGGGAGATTCTTGGACTTCTTGATCACCCTTTTTTGCCTACTTTGTATTCTTACTTTGAAACTGATAAGTTTTACTGTCTCGTTATGGAGTACTGTAGTGGTGGCGATCTTCATTCGCTTCGACAGAAACAGCCAAATAAGTGTTTCACCGAAGAAGCTGCAAGGTTTTATGCTTCAGAAGTTTTGTTAGCTCTTGAGTACCTGCACATGCTCGGCATTGTATACCGAGACTTAAAGCCGGAGAATCTGTTAGTTAGAGACGAAGGTCACATCATGCTCTCCGATTTTGACTTATCGCTCCGCTGCTCCGTCAGTCCAACACTCGTCAAATCATCCTCCACCCACGCAGGAAACGGAAGCGGAAGCGATTCTGGAGGCATATTCAACGACGACCAAGCAGTGCAAGGCACCACTCAGCCATCATCGAGCTTCTTCCCTCGAATCTTGCCTTCGAAGAAAAATCGCAAGGCAAAATCCGACTTCGGCCTATTAGCCAACGGAAACCGCCTCCCCGAACTAATGGCGGAACCAACCAACGTGAGATCAATGTCATTCGTAGGAACACACGAGTATCTCGCGCCCGAAATCATCAAAGGCGAAGGACACGGCAGTGCAGTAGATTGGTGGACATTCGGAATCTTCTTGTACGAATTGTTGCACGGCGCAACGCCTTTCAAAGGCTCAGGATACAAAGCAACACTCTTCAATGTTGTTGGTCAGCCATTAAGGTTTCCGGATAATCCTCAAATAAGTCAAGTGGCTAAGGATCTTATCAGAGGGTTGCTGATAAAAGAACCTCAGAAGAGAATTGCATATAAAAGAGGAGCAACAGAAATAAAACAGCATCCATTTTTTGAAGGAGTGAATTGGGCACTAGTTAGAAGTGCAATGCCACCACATATACCAGATGTTATAGACTTTTCAAAGTATGCTAGAAAGGAAACAGCAACACCACCAGTTGATAAGAAGTTGCCAGAAGTTGCTAGTGATAAAAAATGCAAAGATACAACTGATAATTCTTATGTAGATTTTGAGTATTTTTAG 1713 0.4215 MPDFPKMDHNTSEERFDKRYNTRSCPNSGNTSPTHNKKLNQEKDGYTNEYSANEATRPMEQGSKTDAKFANKTKPQNLSPPNKNMSDAFSRQSPKASRMPSNSEPATSLLTGVSKGMSNHTKNNSQSGLPGSGTSSRSDSLESTSSNIRPHTGGDVRWDAVNMVLKNGPLNLSHFRLLKRIGYGDIGSVYLVELKGTDAHFAMKVMDKAALISRNKLLRSQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEYCSGGDLHSLRQKQPNKCFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVSPTLVKSSSTHAGNGSGSDSGGIFNDDQAVQGTTQPSSSFFPRILPSKKNRKAKSDFGLLANGNRLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGATPFKGSGYKATLFNVVGQPLRFPDNPQISQVAKDLIRGLLIKEPQKRIAYKRGATEIKQHPFFEGVNWALVRSAMPPHIPDVIDFSKYARKETATPPVDKKLPEVASDKKCKDTTDNSYVDFEYF* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2952 570 Gene3D Transferase(Phosphotransferase) domain 1 259 330 - -
Psa1g2952 570 SUPERFAMILY Protein kinase-like (PK-like) 162 528 IPR011009 -
Psa1g2952 570 ProSiteProfiles Protein kinase domain profile. 175 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2952 570 MobiDBLite consensus disorder prediction 1 105 - -
Psa1g2952 570 MobiDBLite consensus disorder prediction 117 150 - -
Psa1g2952 570 Coils Coil 36 56 - -
Psa1g2952 570 SMART serkin_6 175 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2952 570 PANTHER FLIPPASE KINASE 1-RELATED 34 570 - -
Psa1g2952 570 MobiDBLite consensus disorder prediction 45 105 - -
Psa1g2952 570 Gene3D Phosphorylase Kinase; domain 1 173 258 - -
Psa1g2952 570 MobiDBLite consensus disorder prediction 1 21 - -
Psa1g2952 570 Pfam Protein kinase domain 382 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2952 570 Pfam Protein kinase domain 176 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2952 570 Gene3D Transferase(Phosphotransferase) domain 1 382 526 - -
Psa1g2952 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Psa1g2952 570 CDD STKc_phototropin_like 173 529 - -
Psa1g2952 570 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 34 570 - -
Psa1g2952 570 MobiDBLite consensus disorder prediction 22 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2952 Psa-Chr1 260831294 260834098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2952 141 570 AGC Kinase Gene Family AT1G79250 73.214 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Psa1g2952 Pkinase 1.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2952 - - gmx:100819001 830.091