Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2945 ATGATGATGCAAGGAAGTGGAGAATTAACAGTTCCTCCAGGGTTCAGGTTCCACCCCACTGATGAAGAGCTTCTTTACTATTACCTGAGGAAGAAAGTTTCTTACGAAGCTATTGATCTTGATGTTATCAGAGAAGTTGACCTAAACAGACTTGAGCCTTGGGACCTTAAAGATAAGTGTAGGATTGGATCAGGGCCGCAGAATGAGTGGTATTTCTTCAGCCACAAGGACAAGAAATACCCAACAGGAACAAGAACAAATAGAGCAACTACAGCTGGGTTTTGGAAAGCAACTGGAAGAGACAAAGCCATATATCACACAAATTCCAAAAGGATTGGTATGAGGAAAACCCTAGTCTTCTACACTGGACGGGCTCCTCATGGCCACAAAACTGACTGGATCATGCATGAGTACCGTCTTGACGACGATGATAACGCAGAAGTTCAGGAAGATGGTTGGGTTGTATGTAGGGTTTTCAAAAAGAAAAACACAAGCAGAAGTTACCAACAAGAAATTGAAGAAGAAGATCACATGATTAACCACATGAGATCAACAAATGGAGGTCCATGCCACCAGATGCTAGAGCAAAAACATCATCATCACATGCAACAATTAGGACTATATGATTACAACAACAACAGTAACACCTTTGATGGTACACTTCATCTACCACAGTTATTCAGTCCAGAATCATCAGCTCTAGCACCACCACCACCACCAACTTCCTTTCACAATTCATCCATGGACATCCTTGAATGCTCTCAAAACTTGTTGAGGCTCACAACAACAAATACTACCTCTGGACTTAATCTCATGCAACAACAGCAACAACATCAACAAGGAGAGAGGTTGATCAATGGAGGTGATTGGTCATTCTTGGATAAACTACTTGCTTCTCATCACCATGGCAATATGGATCAGAATCTCAGAAACAAGTTATGCAACCCTCTTCATAATCAGCAGGCTGCAACTGCTGATGTTGGATCAACTTCAGCTCAGAAATTTCCATTTCATTACCTTGGTTGTGAGCCTCATCCTCATGATATTATGAAATTTTCAAAGTAA 1065 0.4122 MMMQGSGELTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNRLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGHKTDWIMHEYRLDDDDNAEVQEDGWVVCRVFKKKNTSRSYQQEIEEEDHMINHMRSTNGGPCHQMLEQKHHHHMQQLGLYDYNNNSNTFDGTLHLPQLFSPESSALAPPPPPTSFHNSSMDILECSQNLLRLTTTNTTSGLNLMQQQQQHQQGERLINGGDWSFLDKLLASHHHGNMDQNLRNKLCNPLHNQQAATADVGSTSAQKFPFHYLGCEPHPHDIMKFSK* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2945 354 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 7 335 - -
Psa1g2945 354 Gene3D NAC domain 20 166 IPR036093 GO:0003677|GO:0006355
Psa1g2945 354 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN-RELATED 7 335 - -
Psa1g2945 354 Pfam No apical meristem (NAM) protein 12 140 IPR003441 GO:0003677|GO:0006355
Psa1g2945 354 ProSiteProfiles NAC domain profile. 11 161 IPR003441 GO:0003677|GO:0006355
Psa1g2945 354 SUPERFAMILY NAC domain 3 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2945 Psa-Chr1 260248131 260250776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2945 3 354 NAC Transcription Factor Family AT1G79580 52.174 1.17e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa1g2945 NAM 7.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2945 - - gmx:100789606 485.723