Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2930 ATGGGAACGCCTGTGAACATCATTGTTGGATCACAGGTTTGGGTTGAAGATCCTGTGGTTGCATGGATTGATGGCGAAGTCACAAAAATCAATGGCAAAAATGCTACCATCATTACTACAGAAGGAAAAACTGTTGTGGCAGAAATTTCAAGTATATACCCTAAAGACACAGAGGCACCACCTGCAGGAGTTGATGACATGACCAAGCTAGCATACCTCCACGAACCGGGAGTATTGTATAACCTCTTGTGTCGTTTTTCGCTCAATGAGATATATACATATACAGGGAATATTTTGATCGCGGTGAATCCTTTTCGAAGACTACCGCATTTGTATGACAGTCATATGATGGAGCAGTACAAAGGAGCAGCATTTGGAGAGCTTAGTCCTCATCTTTTTGCTGTAGCAGATACATGTTACAGGGCAATGATGAATGAAAATGGAAGTCAATCCATTTTGGTAAGCGGAGAAAGTGGAGCCGGTAAAACTGAGACGACTAAAATGCTAATGAGATATCTAGCTTTCATGGGAGGTAGATCGAATACCGAAGGAAGGACAGTAGAACAACAGGTTTTGGAGTCCAATCCAGTGTTGGAAGCATTTGGAAATGCCAAAACTGTCAAAAATAACAACTCAAGTCGTTTTGGTAAATTTGTTGAAATTCAATTTGACAAGAATGGGAAGATCTCTGGAGCTGCTATCCGCACGTACCTCCTCGAAAGGTCTCGAGTTTGCCAAGTTTCTGACCCGGAGAGAAACTATCATTGCTTTTACATGCTTTGTGCAGCTCCACCAGAGGATGTCAAGAAGTACAAGCTAGGAGATCCAAGGAAATTTCGCTATCTTAACCAATCGAGCTGTTATGAAGTGTCGAATGTAGATGATGCTAAAGAATACTTGGAGACGAGAAATGCAATGGATATTGTAGGCATCAACCAGGATGAGCAGGACGCTATCTTCCGTGTCGTAGCTGCAATCCTTCATCTTGGAAACATTGACTTCGTCAAAGGAAATGAGTTTGATTCATCCAAGTTAAAAGACGAGAAATCCGTCAACCACCTTCGAACAGTTGCCGAGTTATTCATGTGTGACGAGAAATCACTAGAAGACTCGCTTTGTCAGCGTGTCATTGTTACCCCCGATGGCAACATTACAAAACCACTAGACCCGGATGCAGCTTCTTTGAGCCGAGATGCGTTGGCAAAGACAGTGTACTCCAGATTGTTTGATTGGATCGTCGATAAGATTAACAGTTCAATCGGTCAAGATTCTAATGCAGTAAGCCTAATAGGAGTCCTTGACATTTATGGATTTGAAAGCTTCAAAATCAATAGTTTTGAGCAACTATGCATCAACTTAACGAACGAGAAGTTGCAACAGCATTTTAATCAGCATGTATTCAAGATGGAGCAAGAAGAGTACACGAAGGAGGAAATTAATTGGAGCTACGTAGAATTCGTCGATAATCAGGATGTTCTAGATCTTATTGAGAAGAAACCTGGTGGAATTATTGCTCTTCTTGATGAAGCGTGCATGTTTCCGAAGTCAACTCACGAGACTTTTGCGCAAAAGATGTATCAGACATACAAAGGACACAAGCGATTCGCCAAACCAAAACTTTCTCGAACAGACTTCATAGTTAATCACTACGCCGGAGATGTCACATACCAGGCTGATTATTTTCTTGATAAGAATAAAGATTATGTCGTAGCCGAGCATCAGGCTCTTTTGTGTGCTTCGAAATGCACATTTGTTGCTAATCTTTTCCCTCCTTTACCTGAGGAATCATCAAAGCAATCGAAATTCTCTTCCATTGGCTCACAGTTTAAGCAACAACTTCAATCTCTCATGGAGACACTAAGCACGACAGAACCGCATTACATAAGATGTGTGAAACCAAATACAGTTTTGCAGCCGGGAATATTTGAGAACTTCAATGTCTTAAACCAGTTAAGATGTGGGGGAGTACTTGAGGCAATAAGGATAAGTTGTGCTGGATATCCAACAAAAAGAACGTTTGAAGAGTTCCTCGATCGATTTGGAATGCTCGTCCCTGATGTCCTTGACGGATCCGACGAGAAAAAGGCGTCTATTTCCATATGTGATAAGATGGGTTTAAAAGGCTATCAAATGGGAAAAACAAAAGTATTTCTCAGAGCTGGTCAGATGGCTGAACTAGATGCACGAAGAGCCGAAGTCTTAGCTAAAGCAGCTAGGCTCATACAAAGACAAATCCGAACACATTTAGCTCGAAAAGAGTTCATCACCATGAAAAAGGCCACAATCCGTATTCAGAAAATTTGGAGAGCAAAACTTGCGCGGGAGATCTATGAGGATATGAGGAGAGAAGCAGCTTCTATACGGATACAGAAACATGCACGGGCGCATAGAGCAAGATTGTATTATACATCATTACAAGCATCAGCTATTGTTATTCAGTCAGGGTTGAGAGCATTCGCAGCACGGAACGAATATAGGTTTAGAAGAAGAACAAAGGCTTCAACCAAAATTCAGACACAATGGAGGAAAGTTCAAGCTCTTTGTACTTACAAGAAGCAGAAGAAATCAACTGTTACACTTCAATGTCTGTGGAGGGCTAAAGTAGCACGCAAAGAGCTCAAAAAGCTTCGAATGGCTGCAAGGGAAACCGGGGCACTTAAAGAAGCGAAAGACAAATTGGAGAAACGTGTCGAGGAGCTTACATGGAGACTAGATATTGAGAAGCACATGAGGGTTGACCTTGAAGAAGCTAAGGGGCAAGAGATTTTGAAACTGCAAAACGCGTTACAAGAAATGCAAGGTAAGCTAGATGAAGCTCATAATGCAATTATACATGAAAAAGAAGCAGCGAAAATAGCAATCGAACAAGCACCGCCAGTGATAAAAGAAGTACCTGTTGTGGATAATACCAAGTTGGAGTTACTCACAAATAAAAATGAGAATCTAGAGAGTGAAGTAGAAGAGCTTAAAAACAGGATCAAAGATTTCGAAGAAAGGTATAAGGAAATCGAAAAGGAGAATCAAGAAAGGCTGAAAGAGGCAGAAGAAGCACAGCTTAAAGCAACACAACTTCAAGAAACTATCGAAAGATTAGAATTGAGTTTGTCAAACCTTGAGTCAGAGAACCAGGTTCTTTGCCAGCAGGCTTTGGTCGAATCAAAAAACGAAGATCTCTCTGAAGATATTAAAATCCTCAAGGATCAAATAGCGAATCTAGAGTCAGAGAATGAAGTTCTTCGGAGCCAGGCAGCAAAAGCTGCGGTAGAGCTGAAAGTTCATCCAGAAAAACTAGAAACTGATCACGAAATTGTTGTGGAACATCAGATTCAACCAAGAGCTATTGCAGATTACGCGACAGCACAAATCAAGGACTTGGACACTAGAAATCAAATAGATGAAGAACTGCATGCAAGAAAAGAAGCAAGAGTACCTGTTTCCGTTCTTACGAAGCAAAGATCGCTAACAGAAAGACAGCAGGAAAGTCATGATGCATTGCTCAAGTGTCTTACGGAAGATAAACGTTTCGAGAAGAACAGACCAGCAGTTTCTTGTATTGTTTATAAAGCACTTCTTCATTGGAGGTCCTTTGAAGCCGAGAAGACACAGATATTTGATAAAATTACTCACACTATCCGAACATCTATAGAGAATCAAGAAGGAATCAATGATCTGGCGTATTGGCTTTCAACAACATCAACACTTTTGTTTTATCTACATTGCACATTAAAAGTCAGCAATACAACTAATACATTGTCGCGCAATCGTAACCGTAACTCGCCTGCCACACTTTTTGGAAAAATGGCACAGGGTTTACGTTCGTCTTCAATGGGCATAGGGATATCAAGTGGTTACAGTGGCATGGTGGAAAAGCCAAATGAACAATCTAAAGTGGAAGCCAAGTACCCCGCTATTCTATTTAAGCAACACTTAACTGCATATGTAGAGAAAATATATGGAATGATCCGCGACAGTTTGAAGAAAGAGATTAGTCCATTCTTAAATCTTTGCATTCAGGCACCAAGATCCATAAGATCAAGATCGATAAGAGGGTCATCCAGAAACATCCATTCAAATATAGTTGCAAAACAACAAGCATTGCACATGCACTGGAAAGGCATCGTGAGCAAGTTAGATCACGCCTTTGGTATATTGTCTAACAACTATGTCCCTCCGATGATAACAAGGAAGATATTTAGTCAGGTTTTCTCGTACATGAATGTTCAACTCTTTAATAGTTTGTTGCTTCGTCGCGAGTGCTGCTCCTTTAGCAACGGAGAATATTTGAAGGCAGGTTTGCATGAGTTGGAACTATGGTGTATAAAAGTAACCGATCAGTTTGCTGGCTCATCTTGGGATGAACTCAAACACATACGCCAAAGTGTTGGATTTCTGGTTTTGCATCAAAAGACTCAAAAATCTTTGGAGGAGATCACAAATGAACTATGCCCGGTGTTAAGTATTCCACAAATATATCGCATTGGAACCATGTTCTGGGACGACAAGTACGGAACACAAGGTTTATCGCCAGATGTCATTAGCCGAATGAGAGTTCTTATGACAGAAGACTCAACAAACATACTAAATAACTCATTCCTTCTAGAAGTGGAATCCAGCATTCCATTCTTAATGGAGGAGTTGTTTCGGTCCATGAGCGACATTCGAATATCAGATATGGATGTGGATCCACCAACAATCCTTAGACAAAGATCTGATTTCCAATTCTTGTTGCAGCATATTGATAGTGACTCTCAGTGA 4755 0.4078 MGTPVNIIVGSQVWVEDPVVAWIDGEVTKINGKNATIITTEGKTVVAEISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLYNLLCRFSLNEIYTYTGNILIAVNPFRRLPHLYDSHMMEQYKGAAFGELSPHLFAVADTCYRAMMNENGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSNTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNGKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLGDPRKFRYLNQSSCYEVSNVDDAKEYLETRNAMDIVGINQDEQDAIFRVVAAILHLGNIDFVKGNEFDSSKLKDEKSVNHLRTVAELFMCDEKSLEDSLCQRVIVTPDGNITKPLDPDAASLSRDALAKTVYSRLFDWIVDKINSSIGQDSNAVSLIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKGHKRFAKPKLSRTDFIVNHYAGDVTYQADYFLDKNKDYVVAEHQALLCASKCTFVANLFPPLPEESSKQSKFSSIGSQFKQQLQSLMETLSTTEPHYIRCVKPNTVLQPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFEEFLDRFGMLVPDVLDGSDEKKASISICDKMGLKGYQMGKTKVFLRAGQMAELDARRAEVLAKAARLIQRQIRTHLARKEFITMKKATIRIQKIWRAKLAREIYEDMRREAASIRIQKHARAHRARLYYTSLQASAIVIQSGLRAFAARNEYRFRRRTKASTKIQTQWRKVQALCTYKKQKKSTVTLQCLWRAKVARKELKKLRMAARETGALKEAKDKLEKRVEELTWRLDIEKHMRVDLEEAKGQEILKLQNALQEMQGKLDEAHNAIIHEKEAAKIAIEQAPPVIKEVPVVDNTKLELLTNKNENLESEVEELKNRIKDFEERYKEIEKENQERLKEAEEAQLKATQLQETIERLELSLSNLESENQVLCQQALVESKNEDLSEDIKILKDQIANLESENEVLRSQAAKAAVELKVHPEKLETDHEIVVEHQIQPRAIADYATAQIKDLDTRNQIDEELHARKEARVPVSVLTKQRSLTERQQESHDALLKCLTEDKRFEKNRPAVSCIVYKALLHWRSFEAEKTQIFDKITHTIRTSIENQEGINDLAYWLSTTSTLLFYLHCTLKVSNTTNTLSRNRNRNSPATLFGKMAQGLRSSSMGIGISSGYSGMVEKPNEQSKVEAKYPAILFKQHLTAYVEKIYGMIRDSLKKEISPFLNLCIQAPRSIRSRSIRGSSRNIHSNIVAKQQALHMHWKGIVSKLDHAFGILSNNYVPPMITRKIFSQVFSYMNVQLFNSLLLRRECCSFSNGEYLKAGLHELELWCIKVTDQFAGSSWDELKHIRQSVGFLVLHQKTQKSLEEITNELCPVLSIPQIYRIGTMFWDDKYGTQGLSPDVISRMRVLMTEDSTNILNNSFLLEVESSIPFLMEELFRSMSDIRISDMDVDPPTILRQRSDFQFLLQHIDSDSQ* 1585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2930 1584 Coils Coil 876 910 - -
Psa1g2930 1584 PANTHER MYOSIN 21 1049 - -
Psa1g2930 1584 PANTHER MYOSIN 1052 1574 - -
Psa1g2930 1584 SMART DIL_2 1396 1503 IPR002710 -
Psa1g2930 1584 Gene3D - 439 623 - -
Psa1g2930 1584 Gene3D Kinesin motor domain 65 662 IPR036961 -
Psa1g2930 1584 Pfam IQ calmodulin-binding motif 784 802 IPR000048 GO:0005515
Psa1g2930 1584 Pfam IQ calmodulin-binding motif 807 826 IPR000048 GO:0005515
Psa1g2930 1584 Pfam IQ calmodulin-binding motif 855 874 IPR000048 GO:0005515
Psa1g2930 1584 Pfam IQ calmodulin-binding motif 759 777 IPR000048 GO:0005515
Psa1g2930 1584 Pfam IQ calmodulin-binding motif 736 754 IPR000048 GO:0005515
Psa1g2930 1584 Gene3D - 667 729 - -
Psa1g2930 1584 Coils Coil 972 1089 - -
Psa1g2930 1584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 785 IPR027417 -
Psa1g2930 1584 ProSiteProfiles Dilute domain profile. 1205 1521 IPR002710 -
Psa1g2930 1584 SMART MYSc_2a 56 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa1g2930 1584 ProSiteProfiles IQ motif profile. 734 761 IPR000048 GO:0005515
Psa1g2930 1584 Pfam Myosin head (motor domain) 64 719 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa1g2930 1584 Pfam DIL domain 1397 1500 IPR002710 -
Psa1g2930 1584 Gene3D - 252 310 - -
Psa1g2930 1584 Pfam Myosin N-terminal SH3-like domain 10 47 IPR004009 GO:0003774|GO:0005524|GO:0016459
Psa1g2930 1584 PANTHER MYOSIN-12 21 1049 - -
Psa1g2930 1584 PANTHER MYOSIN-12 1052 1574 - -
Psa1g2930 1584 CDD MYSc_Myo11 76 719 IPR036018 -
Psa1g2930 1584 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Psa1g2930 1584 ProSiteProfiles IQ motif profile. 782 808 IPR000048 GO:0005515
Psa1g2930 1584 ProSiteProfiles IQ motif profile. 757 786 IPR000048 GO:0005515
Psa1g2930 1584 Coils Coil 922 942 - -
Psa1g2930 1584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 882 IPR027417 -
Psa1g2930 1584 ProSiteProfiles IQ motif profile. 853 882 IPR000048 GO:0005515
Psa1g2930 1584 SMART iq_5 733 755 IPR000048 GO:0005515
Psa1g2930 1584 SMART iq_5 756 778 IPR000048 GO:0005515
Psa1g2930 1584 SMART iq_5 781 803 IPR000048 GO:0005515
Psa1g2930 1584 SMART iq_5 804 826 IPR000048 GO:0005515
Psa1g2930 1584 SMART iq_5 829 851 IPR000048 GO:0005515
Psa1g2930 1584 SMART iq_5 852 874 IPR000048 GO:0005515
Psa1g2930 1584 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa1g2930 1584 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa1g2930 1584 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa1g2930 1584 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa1g2930 1584 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa1g2930 1584 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Psa1g2930 1584 Coils Coil 723 743 - -
Psa1g2930 1584 ProSiteProfiles Myosin motor domain profile. 62 731 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa1g2930 1584 CDD MyosinXI_CBD 1156 1544 IPR037975 GO:0007015
Psa1g2930 1584 Gene3D - 784 831 - -
Psa1g2930 1584 Gene3D - 832 881 - -
Psa1g2930 1584 Gene3D - 732 783 - -
Psa1g2930 1584 ProSiteProfiles IQ motif profile. 805 834 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2930 Psa-Chr1 259380589 259390693 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2930 116 1579 Myosins gene family AT2G31900 72.560 0.0 2196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2930 K10357 - gmx:100817933 2750.7