Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2928 ATGGATTGCAGAATTGAAACCGCAGAAACTCGCAGGAACAAGTGTGCTGCATGTTATAGGCAGTTCAACAAAGTGGAGCATCTAGTGGATCACATGAAGATCTCTTATCATTCTGTTCATGAACCAACCTGTGGTATTTGCAGGAAACATTGCAGATCCTTTGAGTCTCTAAGGGAACATCTTATAGGTCCATTGCCAAAACCAGAATGCAAAGAAATCTTTGCTAACCGAGGGTGCAAGTTTTGCTTGAAAGTCCTTGATAGCCCTAACTCTCGCAGGGTCCATCAACAAAAGTGTCAACTCTCTGGATTAAGTGGAATATGTGGCCGATTTTCGAACTTGGGAATTCGCGATAACTTGACAATTGGTGGTGGAAGAGGACCACAAGTAGTTGCACTAGCTTGTAAAATGGTGGGAGGTGGAAGTGATGGTTCACTTGATCTTTGTGCAAGAGTTTGCTTAATAGATGAACATGAGAATATTATCTTCCATTCTTATGTTATTCCACCAATTCCAATCACAAACTACAGGTATGAGACAACTGGTATAAGACATGAATACTTAAGAGATGCAATGCCATTGAAACTAGTTCAAAGGAAGATTCAAGATTTTCTTTGTAATGGAGAACCCATTTGGACAATTCGTTCAAAAGGAGGAAAAGCTAGGATTCTTGTGGGTCATGGTTTAGATCATGACCTTGCATCTTTGCAAATTGAGTATCCAACACCAAAAATAAGGGACACTGCAAAATACCCTCCACTCATGAAAACTAGCAAGCTCAGCAACTCACTCAAATACTTAACACAGGCATATCTTGGGTATGATATTCAAACTGGAATACAAGATCCTTATGATGATTGTGTTGCAGCAATGAGACTCTACATGAGAATGAGAACACAAATACACAAAACAGAAGATTATCCTTTGGCATCTGATTCTCAAAATAGGAATAACTTTGCTTCATGGAGGCAAAGTGAGCTTGAAAGAATGAGTCCTGAACAAATGCTAGAAATCTCAAGATCTGACTACTACTGCTGGTGTTTGGATCCATGA 1053 0.396 MDCRIETAETRRNKCAACYRQFNKVEHLVDHMKISYHSVHEPTCGICRKHCRSFESLREHLIGPLPKPECKEIFANRGCKFCLKVLDSPNSRRVHQQKCQLSGLSGICGRFSNLGIRDNLTIGGGRGPQVVALACKMVGGGSDGSLDLCARVCLIDEHENIIFHSYVIPPIPITNYRYETTGIRHEYLRDAMPLKLVQRKIQDFLCNGEPIWTIRSKGGKARILVGHGLDHDLASLQIEYPTPKIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYDDCVAAMRLYMRMRTQIHKTEDYPLASDSQNRNNFASWRQSELERMSPEQMLEISRSDYYCWCLDP* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2928 350 PANTHER OS02G0709000 PROTEIN 6 349 - -
Psa1g2928 350 Pfam Exonuclease 149 293 IPR013520 -
Psa1g2928 350 SUPERFAMILY Ribonuclease H-like 143 301 IPR012337 -
Psa1g2928 350 Gene3D - 128 316 IPR036397 GO:0003676
Psa1g2928 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Psa1g2928 350 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 6 349 - -
Psa1g2928 350 CDD REX4_like 131 294 IPR037431 GO:0006364|GO:0008408
Psa1g2928 350 SMART exoiiiendus 129 303 IPR013520 -
Psa1g2928 350 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2928 Psa-Chr1 259122253 259124701 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2928 1 349 C2H2 Transcription Factor Family AT3G27970 74.011 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2928 - - gmx:100813973 643.654