Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2914 ATGACGACGGCGCCACCACCAACGCCGCCGCCAGAACTAAAAACCTACTGGTGCCACGAATGCGACATGAGCGTCTCTCTCACTTCCTCTCCATCTCCCTCTCCTCTCCTCTGTCCTCAATGCCACACCCATTTCCTCGAACTCATGGACTCACCTTTCTCCCAAAACGACGCCGATTCGTTCCTCCCTTCTTCTTCCCTCTTCGACGTCCTTTTCCAAGACGCGCTTTTACTACTCGCACCCTCTCCCCCTAAAACCAGCATCGAAACGATCATTCCTATAATAACCGTTACACCGACGCTTCTTTCTTTACTCGATCCAAACGGTGTCGTTTTATGCGCGGTTTGTAAAGATGCTATTTCCGTCGACGAAGAAGCGAAGCAGCTTCCTTGTGATCATCTTTATCACGCCGATTGTATTACGCCGTGGCTTTGTCTTCGATCTTCTTGTCCTCTCTGTCGATTCCGAATCTCAGAGGAGGAAGAAGAAGAAGAAGATGATAACGACGAAGACGATGAAGATGATTTGAATGGTGCGGATGTGATGAGGGAGATGATTGTGCGGATGTCGGAGTTGTCAGAAGATGATTTCTATGGTCTGAGAATTACTCTCAACCACATTGCTTCCCGTCATGCTCTTCTTCATTCTAATGCTTTGGGTGGTGGTGATAATACTGATGCTAGTGAAATTGGCGGAGATGTAGATGGAGAATCTTGA 717 0.4798 MTTAPPPTPPPELKTYWCHECDMSVSLTSSPSPSPLLCPQCHTHFLELMDSPFSQNDADSFLPSSSLFDVLFQDALLLLAPSPPKTSIETIIPIITVTPTLLSLLDPNGVVLCAVCKDAISVDEEAKQLPCDHLYHADCITPWLCLRSSCPLCRFRISEEEEEEEDDNDEDDEDDLNGADVMREMIVRMSELSEDDFYGLRITLNHIASRHALLHSNALGGGDNTDASEIGGDVDGES* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2914 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 14 218 - -
Psa1g2914 238 Pfam zinc-ribbon 15 49 IPR039525 GO:0061630
Psa1g2914 238 Pfam Ring finger domain 113 154 IPR001841 -
Psa1g2914 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 171 IPR013083 -
Psa1g2914 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 14 218 - -
Psa1g2914 238 ProSiteProfiles Zinc finger RING-type profile. 113 154 IPR001841 -
Psa1g2914 238 SUPERFAMILY RING/U-box 110 159 - -
Psa1g2914 238 SMART ring_2 113 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2914 Psa-Chr1 257258269 257262022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2914 11 74 C3H Transcription Factor Family AT3G60080 50.000 4.98e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2914 K11982 - gmx:100775530 228.794