Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2898 ATGGCAGTTAGAAGAAGAAACGTGCTTATTCTCTTAAGCACTTTTTCAACTAATTTCTCCACCACTTCTCATCATCATTACAGAAAACAAATTTCACTCGCTAATCTCTTCCAATCCTTCGGTTTCCCCTCCTCCAACCTTCACCATTTCCTCTCCCACAACCCCTTCCTCTTCAACTCCGATCCATCACACCTCCGCAAATCCCTTTCCACTCTCTTTTCCTTCAAAATTCCACAGAAAACCCTAATTTCCCTCGTTCACGATTGCCCTTCTGTCTTAGAACCGCAATTTCTACATCATTGGGAATTAGCTTTTCCTCAATTCAAATCAAAAGCTTTTAACCCTTCCCCATTGATGATCGCGAACTTGTTGCGATGTTCTAGAAAGTTCCAGTTAAACCCCCTTGAACTCTCACAGAAAGTTGAGATTTTTAAGGGTTTAGGGTTTTCCGACGATGTTACAGCTAGGGTTTTGGAAGAATTTCCCAGCGCGGTTGTAATGACTGAGAATAAAATTGTTGGCGTAATTGATTTTCTTGTGGAATTCGGTGTTCCGAGAGATGAAATAGATAGAGTTGTTCGATTGTATCCTAGGGTTTTGGGATTTGGAGTTGAAGACAGGTTGAAGCCACTGATTCATGAGATGAGGAGATTAGGATTTTCTCGCCGTGAGATTAAGGCGGAGATTGTTAGGGATCCGGGTATTCTGGGAATGGAGATCGGGGAATTTTCGCGGTGTTTGAAGCTGTTGCAGAGTTTGAAATGCAGAGAGGTAATTAAAGAGAGTATTTTTGGAGATGGTTTGGTTAGAGCTTGTTTTGAAGTGAAACTGAGAGTGGATTGTTTGTGCGGTCGCGGTTTGATTCGTAGGGATGCTTTGAAGGTGTTATGGAAGGAACCGAGGTTGATGACTTACGATTTGGAGGATATTGAGAAGAAGATTGAGTTTTTAGTTCAAAGGATGAAGTATGGTGTTGATTGTTTGCATGAAGTTCCTGAATATTTGGGTGTGAATTTTGAGAAACAGATTGTTCCTAGATACAATGTGATTGAGTATTTGAAAGGAAAAGGTGCAATTGGGTTTGAAATTGGATTGAAGGATATCATCAAACCAACTAGGGTTAGGTTTTATAATCTTTATGTTAAGCCTTATCCAGAATGTGAAAAAATCTATGGCAGATTTTCAGGTAAGGTTGAAGTTAAAAGGAAGCATCCGGATGGACTTTGGAAGCTGTTCAAACCACAGAAGTTCACTCAAACCAGTAAAGATGTGAAGAACATGAAGGCTTTCATGGACTCCTCACTGGTGTAG 1311 0.405 MAVRRRNVLILLSTFSTNFSTTSHHHYRKQISLANLFQSFGFPSSNLHHFLSHNPFLFNSDPSHLRKSLSTLFSFKIPQKTLISLVHDCPSVLEPQFLHHWELAFPQFKSKAFNPSPLMIANLLRCSRKFQLNPLELSQKVEIFKGLGFSDDVTARVLEEFPSAVVMTENKIVGVIDFLVEFGVPRDEIDRVVRLYPRVLGFGVEDRLKPLIHEMRRLGFSRREIKAEIVRDPGILGMEIGEFSRCLKLLQSLKCREVIKESIFGDGLVRACFEVKLRVDCLCGRGLIRRDALKVLWKEPRLMTYDLEDIEKKIEFLVQRMKYGVDCLHEVPEYLGVNFEKQIVPRYNVIEYLKGKGAIGFEIGLKDIIKPTRVRFYNLYVKPYPECEKIYGRFSGKVEVKRKHPDGLWKLFKPQKFTQTSKDVKNMKAFMDSSLV* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2898 436 Gene3D Transcription termination factor 3, mitochondrial 166 394 IPR038538 -
Psa1g2898 436 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL 45 432 - -
Psa1g2898 436 SMART mt_12 120 150 IPR003690 GO:0003690|GO:0006355
Psa1g2898 436 SMART mt_12 325 359 IPR003690 GO:0003690|GO:0006355
Psa1g2898 436 SMART mt_12 226 256 IPR003690 GO:0003690|GO:0006355
Psa1g2898 436 SMART mt_12 190 221 IPR003690 GO:0003690|GO:0006355
Psa1g2898 436 SMART mt_12 293 324 IPR003690 GO:0003690|GO:0006355
Psa1g2898 436 SMART mt_12 155 185 IPR003690 GO:0003690|GO:0006355
Psa1g2898 436 SMART mt_12 48 78 IPR003690 GO:0003690|GO:0006355
Psa1g2898 436 Pfam mTERF 131 248 IPR003690 GO:0003690|GO:0006355
Psa1g2898 436 Pfam mTERF 277 370 IPR003690 GO:0003690|GO:0006355
Psa1g2898 436 PANTHER CGI-12 PROTEIN-RELATED 45 432 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2898 Psa-Chr1 256134712 256136912 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa1g2898 mTERF 9.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2898 - - cam:101513737 723.391