Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2880 ATGGAATTGGAATATCAGTGGCTGAAAAAGCTATGGTGGACAGTAGGGTTGATAGTGATAAGCAGTGTTATAGTATTGGTGGAGAAAGTGTTCTTGAAGCCAAGAAGGATTAGAACCATGCTTGAAAAACAAGGTATCAAAGGACCAAAGCCTTCTTTTCCATTCGGCAATGTTACTGAGATGCAACAGATTCGTCCTCAACCTTCTGCATCTGGTGATTCCACTGAAGATTGGGTTAATTCTTTGTTTCCATATTTTCAGACATGGAAACAACAATATGGCTCATTGTTTACCTACTCCACTGGAATCAAGCAACATTTGTATATTGAGAGTGGTAAAGTGATCAGAGATTTGAGTGTGCATATGTCCCCTGATCTTGGTAGGGTTGAGTATCTAAACAAAGCATTATTGCCAATGCTTGGAGATGGTATTCTTAGAGCCAATGGAAAATCATGGATCTTCCAAAGAAATCTTATTATTACTGAATTATTCATGAGCAAAGTTAAGACTATGCTAGGTCACATGGAAGGTTCTACGCTAGAAATTGTTCAAAAATGGGAAAGGCTAATAGATGAAAGTAAAGACAAGGTTGTAGAAATAGTGATTGAAAATGACCTCAAGGTTCTTTCAGAGAATATTATATCCAAAGCATGTTTTGGCAGTGATTATACACAAGGAAAATATATTTTTGAAAAATTAGCAGGGATGCAAAACAAGCTTTCAAAGACTAGTACTCTTTTGGGATATCTAAACCTAAGTTTTCTCCCTTCTAAGGAAAGCAGAGAGATATGGAAGCTGAAGAAAGAGGTTGATGTGTTGATAATGAATATCATAAATGCTCGCGAAAAGCAAAACCAAGAGAACAACAATGGTGAGAGACAAAATGATCTGTTACAGAAAATTATAGAAGGTGTTGCTAAGGAGAAACTCTTGAATGTTAGCGGACAAGGAACTTTGAAACGTGGCCATGACATGAACCAGTTGATTATAGATATCTGCAAAAGTATCTACTTTGCTGGCTCTGAATCAACTGCTCTTTCAGTTGTTTGGGCTTTGTATCTCCTTGCAGTTTATCCTGAATGGCAAAAACGTATTCGAGATGAGATTTCGGAAGTCTTTGGTGATGATTCGCCTCCTTCATTTACCGACATGAGCAAACTTCAAAAGATGAAAACGCTAACAACTGTGGTTCTAGAGAGTATGCGTTTGTACGGGCCTGCAGTGACGAACTCGAGGGAGACTTTTGCTGATTTGAAGATAGGAGATTTAGTGCTGCCTAAAGGATTGTACCTTTGGATGTTTGTTCCATCGCTGCACCGCGACGTTGATAATTGGGGACCCGATGCACTTGAATTCAAGCCAGAAAGATTTGCTAATGGTGTTTCAGGAGCTTGTAAGTATACACAAGCTTACTTGCCATTCGGATATGGGAGTCGGTTCTGCTTAGGCCAAAACTTCACCCTGACGGAAATTAAGATCGTGATTGGGCTTATGGTCCACAATTTCGACTTTAAACTTTCGCCTAATTATGTCCATTGCCCTGCGTCGAATTTGTTGTTGGTACCAAAGTATGGTATGAAGCTTCTTGTTAGCAAGCGTAATGCTGGAAAATGA 1614 0.3916 MELEYQWLKKLWWTVGLIVISSVIVLVEKVFLKPRRIRTMLEKQGIKGPKPSFPFGNVTEMQQIRPQPSASGDSTEDWVNSLFPYFQTWKQQYGSLFTYSTGIKQHLYIESGKVIRDLSVHMSPDLGRVEYLNKALLPMLGDGILRANGKSWIFQRNLIITELFMSKVKTMLGHMEGSTLEIVQKWERLIDESKDKVVEIVIENDLKVLSENIISKACFGSDYTQGKYIFEKLAGMQNKLSKTSTLLGYLNLSFLPSKESREIWKLKKEVDVLIMNIINAREKQNQENNNGERQNDLLQKIIEGVAKEKLLNVSGQGTLKRGHDMNQLIIDICKSIYFAGSESTALSVVWALYLLAVYPEWQKRIRDEISEVFGDDSPPSFTDMSKLQKMKTLTTVVLESMRLYGPAVTNSRETFADLKIGDLVLPKGLYLWMFVPSLHRDVDNWGPDALEFKPERFANGVSGACKYTQAYLPFGYGSRFCLGQNFTLTEIKIVIGLMVHNFDFKLSPNYVHCPASNLLLVPKYGMKLLVSKRNAGK* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2880 537 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 474 483 IPR017972 GO:0005506|GO:0016705
Psa1g2880 537 Coils Coil 281 301 - -
Psa1g2880 537 PANTHER CYTOCHROME P450 FAMILY MEMBER 10 528 - -
Psa1g2880 537 Gene3D Cytochrome P450 30 536 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g2880 537 PRINTS E-class P450 group I signature 90 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g2880 537 PRINTS E-class P450 group I signature 209 227 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g2880 537 PRINTS E-class P450 group I signature 328 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g2880 537 PRINTS E-class P450 group I signature 348 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g2880 537 PRINTS E-class P450 group I signature 471 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g2880 537 PRINTS E-class P450 group I signature 481 504 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g2880 537 PANTHER CYTOCHROME P450 FAMILY PROTEIN 10 528 - -
Psa1g2880 537 PRINTS P450 superfamily signature 339 356 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g2880 537 PRINTS P450 superfamily signature 395 406 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g2880 537 PRINTS P450 superfamily signature 472 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g2880 537 PRINTS P450 superfamily signature 481 492 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g2880 537 SUPERFAMILY Cytochrome P450 77 533 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g2880 537 Pfam Cytochrome P450 82 528 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2880 Psa-Chr1 254046737 254050079 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2880 114 530 Cytochrome P450 AT5G24900 39.430 4.78e-109 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2880 - - cam:101498882 632.484