Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2869 ATGTCGGCGTCGACTGGATCGTTAAAACCGACTAAGAGGGTTCGGTCTTCGGGATTGAACTTGCAGATTGCTTACTGTCAAGTTTATGGATGTAATAAGGATCTGAGTGGTTGTAAAGATTATCACAAGAGGCATAAAGTTTGTGAGGTTCATTCAAAGACTTCTAAAGTTATTGTTAATGGAATTGAGCAGAGGTTTTGTCAACAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGTCTTGCAGGCCATAACGAGCGCCGAAGAAAGCCACAAGTTGGTATTCACTCAGGAAGGGCTGGGAGGTTTCTTCAACCATATGGCGATAGCAGATTCCAGGGAAGCATGCTAACATCAGCATCTTTTATATGCCAAGATATACTCCCCGGCGAGGTCTTTTCTTCCGAGAGATGTGGAACTAGTAACTGGTGGAGACCTATAAAAGCCGAAGACGGAACCGGATCTAGTTTTAGGCCTCTTTCTTCTATTCCAATTACCAATGCACATCCTCATTCAAGAACTCTATTTCCTTCATATAGCGATAAACAATTTCCTTTTCTACACGAAAATGTTCCTGTGTCTGCTACAGGAAGCATCTTCTGTGAAGACAATAGTCAATATCCTTCTATCCTCGAAGGCTCGAATACCAGATCACAATCATTATTCCAAGATACCTCCTTAGGAAGCGAAGACTTCAATGTTTTTGAAACAGAATCGACTGTTCAAGGATTATCGGGAGTATCAGATGGTGGTTGTGCTCTCTCTCTTCTGTCATCTCAGTCTCAGAACTCTTCAAGCCAATCGTCGGGAATTCCCGTGCCTCGTCATTTGGTCGGTCCAAGCAGCCATAGCCATAGCCATTATCACATGAGTCAGGTTTCCGAAAAGATGATAGGAATGGGTTCACAAGCATCAAGTGGCCTGTCGGATAGGTTTCCGTCTGAATTAAATCCGACAGATCGAAATCATCTCAGTCCTATACTGATATCAGACAATAATGAAACTGTCCATTTCGAAATGGCTGATCGGTTTTTTCAAGGGTCCGATTTTGTCAACGTGAAAGGCCGTCTTTCTTGTGAAGACGGAACAACCATTGACTTGCTTCAACTTTCGTCACAACTTCAGCGCGTCGAGCATCAGACACGAGCCTTGCAGGTGAAGCAAGAAAATGGTTCTTCTTGCTCTCTCCGGATTACTTAA 1227 0.4328 MSASTGSLKPTKRVRSSGLNLQIAYCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGRAGRFLQPYGDSRFQGSMLTSASFICQDILPGEVFSSERCGTSNWWRPIKAEDGTGSSFRPLSSIPITNAHPHSRTLFPSYSDKQFPFLHENVPVSATGSIFCEDNSQYPSILEGSNTRSQSLFQDTSLGSEDFNVFETESTVQGLSGVSDGGCALSLLSSQSQNSSSQSSGIPVPRHLVGPSSHSHSHYHMSQVSEKMIGMGSQASSGLSDRFPSELNPTDRNHLSPILISDNNETVHFEMADRFFQGSDFVNVKGRLSCEDGTTIDLLQLSSQLQRVEHQTRALQVKQENGSSCSLRIT* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2869 408 Gene3D - 18 87 IPR036893 GO:0003677|GO:0005634
Psa1g2869 408 PANTHER 1 PROTEIN, PUTATIVE-RELATED 9 408 - -
Psa1g2869 408 SUPERFAMILY SBT domain 24 104 IPR036893 GO:0003677|GO:0005634
Psa1g2869 408 Pfam SBP domain 26 99 IPR004333 GO:0003677
Psa1g2869 408 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 9 408 IPR044817 GO:0003677
Psa1g2869 408 ProSiteProfiles Zinc finger SBP-type profile. 23 100 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2869 Psa-Chr1 253582778 253585571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2869 2 183 SBP-box Gene Family AT1G69170 49.733 2.35e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa1g2869 SBP 3.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2869 - - gmx:100777766 602.823