Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2860 ATGGGGAGAGGAAGGGTGCAATTGAAGAGGATTGAGAACAAGATCAATAGGCAAGTGACATTTTCAAAGAGAAGATGTGGTCTGTTGAAGAAAGCTCATGAGATCTCTGTGCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCAACAAAGGAAAACTCTATGAATATTCAAGCGATCCCTGTATGGAAAGAATTCTAGAACGATATGAAAGGTATTCATATGCGGAGAGGCAACATGTTCCAAATGATCAGCCCCAAAATGAAAATTGGATTATAGAACATGCAAAGTTGAAGGCAAGGTTGGAAGTCATACAGAAAAATCAAAGGAATTTTATGGGTGAAGAACTTGATGGCTTAAGTATGAAAGAGCTTCAGAATTTGGAGCATCAACTTGATTCAGCTCTCAAACAGATTAGATCAAGAAAGAACCAAGTTGTGTATGAATCCATTTCAGAGCTCCAAAAAAAGGATAAGGCCCTTCAAGAAAAAAACAATCTGCTCACAAAAAAGATAAAGGAGAAAGAGAAGGCATTAGCCCAACTTGAGCTACACAATGATGATATGGATCTAGATTCTACTGCACTTGTACCTCAACCATTGGAGACATTGAATATTGGATGTTCCCCTCAAGATAGAGGTGATAATGAAGGAAGCCAAACTCAATCTAATGCCCTTCTTCCACCATGGATGCTTCGTCCTATAAATGACTAG 714 0.3866 MGRGRVQLKRIENKINRQVTFSKRRCGLLKKAHEISVLCDAEVALIVFSNKGKLYEYSSDPCMERILERYERYSYAERQHVPNDQPQNENWIIEHAKLKARLEVIQKNQRNFMGEELDGLSMKELQNLEHQLDSALKQIRSRKNQVVYESISELQKKDKALQEKNNLLTKKIKEKEKALAQLELHNDDMDLDSTALVPQPLETLNIGCSPQDRGDNEGSQTQSNALLPPWMLRPIND* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2860 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa1g2860 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa1g2860 237 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Psa1g2860 237 Coils Coil 88 108 - -
Psa1g2860 237 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 211 - -
Psa1g2860 237 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Psa1g2860 237 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa1g2860 237 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa1g2860 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa1g2860 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 211 - -
Psa1g2860 237 MobiDBLite consensus disorder prediction 213 237 - -
Psa1g2860 237 MobiDBLite consensus disorder prediction 213 227 - -
Psa1g2860 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa1g2860 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa1g2860 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa1g2860 237 Coils Coil 122 145 - -
Psa1g2860 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Psa1g2860 237 Coils Coil 151 192 - -
Psa1g2860 237 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2860 Psa-Chr1 251632066 251650509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2860 1 200 MADS-box Gene Family AT1G26310 62.376 2.67e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa1g2860 K-box 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2860 K09264 - gmx:100816836 370.163