Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2856 ATGCAAAGGAAGGACCCAGAGGAACATCAAGTGAAATTTACAGAAAGTATAAGAAGGAACAAAAACAGAAGAAACCAAATCAAGTCACAAGAAACAAGACTTGATTCAATGTTGGTTCCCTATCCAAGTTGCAAGAACAGTCTTGTGTTTCCTTGCAGACCTGGCTATGGCCAACTTGGTACTAAGTGTCTCATCAAAGCCAACCATTTTCTTGTACATGTATCAGTCTCTGATTTAAGCCATTACAATGTTAAAATAACACCTGAAGTTAGTTCTAGTAGAACAAGAAGGGCTGTCATATCTGAGCTTGTGAGGCTTCACAAGAACACTGACTTAGCCAATAGGCTCCCTGTGTATGATGGAGGAATAAATCTTTACACTGCCGGTTTGCTTCCTTTTGTATACAAAGATTTTAACGTAACATTGATTGAGGATGAATATGTGACCAGGGAAAGAGAATTTAAGGTGGCAATCAAGTTTGCAACTAGTGTTAGCATGCATCAACTTAGGGAACTTCTAAGTGGGAAACAAGTGGAAACTCCACAAGAAGTACTTAGTGTTTTTGACATTGTGTTGAAGGAGGTTGCAGCTCAAAGCTACATACCAATTGGAAGATTTCTCTATTCTCCTGATGTAAGGAAACCTCAGAAACTTGGTGGTGGCATTGAATCATGGCGTGGATTTTACCAGAGCATAAGGCCAACTCAAATGGGATTGTCACTAAACATTGATATGTCATCAATGGCATTTATTGAACCAGTACCTGTAATTGACTTTGTTGCTCAAATTCTTGGAAAAGATGTGCACTCAAAACCATTGTCAGATGCAGATCGTGTCAAGATTAAAAAGGCCTTAAGAGGAGTAAAAGTCGACATCACACATAGAGGAAATTTTAGAAGGAAATATAGAATATCAGGATTGACTTCACAACCAACAAGGGAGCTTATTTTTCCACTTGATGAGCAAATGAACATGAAATCAGTAGTTGATTATTTTCAAGAAATGTATGGATATACAATCAAATATCCTCATTTACCTTGCCTTCAAGTCGGAAGTTCGAGTAAAGCGAACTATATGCCCATGGAGGTATGCAAGATAGTTAGAGGCCAGAGATATACAAAAGGGCTGAACGAAAAGCAAATTACTTCTTTGCTTAAGTTCTCATGCCAGAGACCGCGTGAACAAGAGACGGACATTTTACAGACAATTGAACAAAACAATTATGAGAACAATCCCTTTGCAAAGGAGTTTGGCATCAGCATAGACAACACGCTTGCATCGGTGGAGGCTCGGGTTCTTCCTCCTCCATGGTTGAAATATAATGACACTGGAAGAGAGAAAGAACACTTGCCACAAGTCGGACAGTGGAATATGATGAACAAGAAAGTTATAAATGGAAGTACTGTAAGGTATTGGGCATGCATCAATTTCTCACGAAGTGTACAAGAAAGTATAGCTCGTGGATTTTGCCAACAGTTAGTTCAGAAGTGTCGAATCTTAGGCATGGAATTTAGTCAGGAACCTGTGATTCCTGTATATTCAGCAAGACCGGATCAGGTCAAGAAGGCTTTGAAGTATGTACACACTGCTGCTCTAGACAAACTTGACGGTAAAGAGCTAGAGTTGTTGATTGCCATTCTTCCCGACATCAATGGCTCTTTGTATGGCGATCTCAAAAGAATCTGTGAAACAGATCTAGGTTTGATTTCACAATGTTGTCTTGCAAAATATGTATTCAAGACTCACAGACAGTACCTGGCAAATGTGGCCCTAAAACTCAATGTCAAGATGGGAGGAAGAAACACGGTACTTTTGGATGCATTAAGTTGGAGGATTCCACTGGTTAGTGATATTCCAACGATAATATTTGGAGCTGATGTAACTCATGCAGAATCCGGAGACAATAACTGTCCATCCATTGCTGCAGTTGTAGCCTCTCAAGACTGGCCAGAAATATCGAAGTATGCAGGGTTGGTTTGCGCTCAGCCTCATCGAGAAGAACTCATCAAAGATCTTTACAAATGTTGGAAAGATCCACAGAGGGGAGTCATTTACGGTGGTATGATCAGGGAGCTTTTACTTTCATTTAAGAAGGCAACTGGACAAAAACCGTTGAGAATAATCTTTTACAGGGATGGGGTAAGTGAAGGACAGTTCTACCAAGTTTTGCTATATGAGCTTGACGCCATCCGTAAGGTACTTGGACAATAA 2211 0.4003 MQRKDPEEHQVKFTESIRRNKNRRNQIKSQETRLDSMLVPYPSCKNSLVFPCRPGYGQLGTKCLIKANHFLVHVSVSDLSHYNVKITPEVSSSRTRRAVISELVRLHKNTDLANRLPVYDGGINLYTAGLLPFVYKDFNVTLIEDEYVTREREFKVAIKFATSVSMHQLRELLSGKQVETPQEVLSVFDIVLKEVAAQSYIPIGRFLYSPDVRKPQKLGGGIESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPVPVIDFVAQILGKDVHSKPLSDADRVKIKKALRGVKVDITHRGNFRRKYRISGLTSQPTRELIFPLDEQMNMKSVVDYFQEMYGYTIKYPHLPCLQVGSSSKANYMPMEVCKIVRGQRYTKGLNEKQITSLLKFSCQRPREQETDILQTIEQNNYENNPFAKEFGISIDNTLASVEARVLPPPWLKYNDTGREKEHLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESIARGFCQQLVQKCRILGMEFSQEPVIPVYSARPDQVKKALKYVHTAALDKLDGKELELLIAILPDINGSLYGDLKRICETDLGLISQCCLAKYVFKTHRQYLANVALKLNVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHAESGDNNCPSIAAVVASQDWPEISKYAGLVCAQPHREELIKDLYKCWKDPQRGVIYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKVLGQ* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2856 736 Pfam Piwi domain 543 733 IPR003165 GO:0003676
Psa1g2856 736 Gene3D paz domain 248 372 - -
Psa1g2856 736 Gene3D - 432 605 - -
Psa1g2856 736 ProSiteProfiles Piwi domain profile. 542 736 IPR003165 GO:0003676
Psa1g2856 736 Pfam Mid domain of argonaute 451 528 IPR032473 -
Psa1g2856 736 PANTHER PROTEIN ARGONAUTE 10 14 732 - -
Psa1g2856 736 SUPERFAMILY PAZ domain 249 408 IPR036085 GO:0005515
Psa1g2856 736 Pfam Argonaute linker 2 domain 396 440 IPR032472 -
Psa1g2856 736 Pfam N-terminal domain of argonaute 62 192 IPR032474 -
Psa1g2856 736 Pfam PAZ domain 258 384 IPR003100 GO:0005515
Psa1g2856 736 SMART PAZ_2_a_3 258 390 IPR003100 GO:0005515
Psa1g2856 736 SUPERFAMILY Ribonuclease H-like 531 734 IPR012337 -
Psa1g2856 736 SMART DUF1785_2 201 253 IPR014811 -
Psa1g2856 736 Pfam Argonaute linker 1 domain 202 251 IPR014811 -
Psa1g2856 736 Gene3D - 611 736 IPR036397 GO:0003676
Psa1g2856 736 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 14 732 - -
Psa1g2856 736 CDD PAZ_argonaute_like 253 367 - -
Psa1g2856 736 ProSiteProfiles PAZ domain profile. 254 368 IPR003100 GO:0005515
Psa1g2856 736 SMART Piwi_a_2 542 736 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2856 Psa-Chr1 250866257 250881225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2856 45 733 Eukaryotic Initiation Factors Gene Family AT5G43810 69.452 0.0 1041
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2856 K11593 - gmx:100813485 1241.87