Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2839 ATGTCTTCACAGCAAGAAAATTCTGATGCAAAAGATTTATCAGGTCCACACAGAAGGATAACGAATTTGATGCATCAAGCTGGAAACAAGTTTTGCGCGGATTGCGGAACTCCAGAACCAAAATGGGTATCTTCAAGTCTTGGAGTATTTATTTGCATAAAGTGTTCTGGCATACATAGAAGTTTAGGAGTCCACATATCAAAGGTTGCATCGTTGAAGTTAGATGAATGGTCGGAGGAACAAGTCGATGCATTAGAGAAGTTAGGTGGCAATACATTGTTAAATAAAAAATACGAAGCTTTCCTCCCAAGTAATATAAAAAAACCAAAACCACATACCTCGATCGAAGACCGCTGCGATTATATCAGGAAAAAGTACGAGCAACTTCAGTTCATGGAGTGTGATGACAATTCAGCATGTGCAATTGTACCCTCTCGAAGAAGAAGTTTATCGTTGGCTCAGAGTAGTTCTTCATGTTACACTTTTCATATGGAAAACAAAAAATACGACAAAGCCCCAACCAAACATCGTATCGGAAACGCATTTCGAAATAGTTGGACAAGAAAAGATTCTGAGCACAAGTCTTCAAAGAAGAGCTCCTCGTTGGCAGGTATGGTTGAATTTGTTGGGTTGATTAAGGTTAATGTTGTAAAAGGCACTCACTTGGCTGTTAGAGATGTAATGACAAGTGACCCTTATGTGATCCTTTCTTTGGGACACCAATCAGTAAAAACGCGTGTTATAAAGAACAATTTGAATCCAGTTTGGAATGAAAGTTTGATGCTATCAATTCCAGAAAACATTCCTCCCCTTAAAGTGCTAGTGTACGATAAGGATACATTTTCAACCGATGATTTCATGGGGGAAGCAGAAATAGACATTCAACCACTGGTTTTAGCCGCAATTGCATATGAAAAATCTATGGTGAACGAGTCGATGCAGCTAGAGAAATTTGTAGCAAGCAGAGACAACTCTCTTGTTAGAGATGGTGTGATATCTCTTGATGAAGGGAAGATCAAACAAGAAATCTCAGTGAGGCTACAGAATGTTGAGAGAGGTGTTCTTGAGATTGAGCTTGAGTGTGTTCCTCTTACTCAATAG 1101 0.3915 MSSQQENSDAKDLSGPHRRITNLMHQAGNKFCADCGTPEPKWVSSSLGVFICIKCSGIHRSLGVHISKVASLKLDEWSEEQVDALEKLGGNTLLNKKYEAFLPSNIKKPKPHTSIEDRCDYIRKKYEQLQFMECDDNSACAIVPSRRRSLSLAQSSSSCYTFHMENKKYDKAPTKHRIGNAFRNSWTRKDSEHKSSKKSSSLAGMVEFVGLIKVNVVKGTHLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVLAAIAYEKSMVNESMQLEKFVASRDNSLVRDGVISLDEGKIKQEISVRLQNVERGVLEIELECVPLTQ* 367
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2839 366 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 7 366 IPR044518 GO:0005096|GO:0005543
Psa1g2839 366 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 207 301 IPR035892 -
Psa1g2839 366 CDD ArfGap 23 126 - -
Psa1g2839 366 Pfam C2 domain 211 297 IPR000008 -
Psa1g2839 366 SUPERFAMILY ArfGap/RecO-like zinc finger 18 132 IPR037278 -
Psa1g2839 366 Pfam Putative GTPase activating protein for Arf 19 133 IPR001164 GO:0005096
Psa1g2839 366 Gene3D C2 domain 208 365 IPR035892 -
Psa1g2839 366 SMART C2_3c 211 306 IPR000008 -
Psa1g2839 366 CDD C2_ArfGAP 209 353 - -
Psa1g2839 366 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 7 366 - -
Psa1g2839 366 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Psa1g2839 366 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Psa1g2839 366 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Psa1g2839 366 Gene3D Arf GTPase activating protein 1 140 IPR038508 -
Psa1g2839 366 ProSiteProfiles C2 domain profile. 193 308 IPR000008 -
Psa1g2839 366 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 139 IPR001164 GO:0005096
Psa1g2839 366 SMART arf_gap_3 17 139 IPR001164 GO:0005096
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Psa1g2839 Psa-Chr1 248382252 248386136 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2839 18 366 C2H2 Transcription Factor Family AT4G21160 47.564 2.00e-117 342
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2839 K12486 - gmx:100789552 584.334