Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa1g2839 | ATGTCTTCACAGCAAGAAAATTCTGATGCAAAAGATTTATCAGGTCCACACAGAAGGATAACGAATTTGATGCATCAAGCTGGAAACAAGTTTTGCGCGGATTGCGGAACTCCAGAACCAAAATGGGTATCTTCAAGTCTTGGAGTATTTATTTGCATAAAGTGTTCTGGCATACATAGAAGTTTAGGAGTCCACATATCAAAGGTTGCATCGTTGAAGTTAGATGAATGGTCGGAGGAACAAGTCGATGCATTAGAGAAGTTAGGTGGCAATACATTGTTAAATAAAAAATACGAAGCTTTCCTCCCAAGTAATATAAAAAAACCAAAACCACATACCTCGATCGAAGACCGCTGCGATTATATCAGGAAAAAGTACGAGCAACTTCAGTTCATGGAGTGTGATGACAATTCAGCATGTGCAATTGTACCCTCTCGAAGAAGAAGTTTATCGTTGGCTCAGAGTAGTTCTTCATGTTACACTTTTCATATGGAAAACAAAAAATACGACAAAGCCCCAACCAAACATCGTATCGGAAACGCATTTCGAAATAGTTGGACAAGAAAAGATTCTGAGCACAAGTCTTCAAAGAAGAGCTCCTCGTTGGCAGGTATGGTTGAATTTGTTGGGTTGATTAAGGTTAATGTTGTAAAAGGCACTCACTTGGCTGTTAGAGATGTAATGACAAGTGACCCTTATGTGATCCTTTCTTTGGGACACCAATCAGTAAAAACGCGTGTTATAAAGAACAATTTGAATCCAGTTTGGAATGAAAGTTTGATGCTATCAATTCCAGAAAACATTCCTCCCCTTAAAGTGCTAGTGTACGATAAGGATACATTTTCAACCGATGATTTCATGGGGGAAGCAGAAATAGACATTCAACCACTGGTTTTAGCCGCAATTGCATATGAAAAATCTATGGTGAACGAGTCGATGCAGCTAGAGAAATTTGTAGCAAGCAGAGACAACTCTCTTGTTAGAGATGGTGTGATATCTCTTGATGAAGGGAAGATCAAACAAGAAATCTCAGTGAGGCTACAGAATGTTGAGAGAGGTGTTCTTGAGATTGAGCTTGAGTGTGTTCCTCTTACTCAATAG | 1101 | 0.3915 | MSSQQENSDAKDLSGPHRRITNLMHQAGNKFCADCGTPEPKWVSSSLGVFICIKCSGIHRSLGVHISKVASLKLDEWSEEQVDALEKLGGNTLLNKKYEAFLPSNIKKPKPHTSIEDRCDYIRKKYEQLQFMECDDNSACAIVPSRRRSLSLAQSSSSCYTFHMENKKYDKAPTKHRIGNAFRNSWTRKDSEHKSSKKSSSLAGMVEFVGLIKVNVVKGTHLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVLAAIAYEKSMVNESMQLEKFVASRDNSLVRDGVISLDEGKIKQEISVRLQNVERGVLEIELECVPLTQ* | 367 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa1g2839 | 366 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 7 | 366 | IPR044518 | GO:0005096|GO:0005543 | |
Psa1g2839 | 366 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 207 | 301 | IPR035892 | - | |
Psa1g2839 | 366 | CDD | ArfGap | 23 | 126 | - | - | |
Psa1g2839 | 366 | Pfam | C2 domain | 211 | 297 | IPR000008 | - | |
Psa1g2839 | 366 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 18 | 132 | IPR037278 | - | |
Psa1g2839 | 366 | Pfam | Putative GTPase activating protein for Arf | 19 | 133 | IPR001164 | GO:0005096 | |
Psa1g2839 | 366 | Gene3D | C2 domain | 208 | 365 | IPR035892 | - | |
Psa1g2839 | 366 | SMART | C2_3c | 211 | 306 | IPR000008 | - | |
Psa1g2839 | 366 | CDD | C2_ArfGAP | 209 | 353 | - | - | |
Psa1g2839 | 366 | PANTHER | CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN | 7 | 366 | - | - | |
Psa1g2839 | 366 | PRINTS | HIV Rev interacting protein signature | 29 | 48 | IPR001164 | GO:0005096 | |
Psa1g2839 | 366 | PRINTS | HIV Rev interacting protein signature | 48 | 65 | IPR001164 | GO:0005096 | |
Psa1g2839 | 366 | PRINTS | HIV Rev interacting protein signature | 69 | 90 | IPR001164 | GO:0005096 | |
Psa1g2839 | 366 | Gene3D | Arf GTPase activating protein | 1 | 140 | IPR038508 | - | |
Psa1g2839 | 366 | ProSiteProfiles | C2 domain profile. | 193 | 308 | IPR000008 | - | |
Psa1g2839 | 366 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 17 | 139 | IPR001164 | GO:0005096 | |
Psa1g2839 | 366 | SMART | arf_gap_3 | 17 | 139 | IPR001164 | GO:0005096 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa1g2839 | Psa-Chr1 | 248382252 | 248386136 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa1g2839 | 18 | 366 | C2H2 Transcription Factor Family | AT4G21160 | 47.564 | 2.00e-117 | 342 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa1g2839 | K12486 | - | gmx:100789552 | 584.334 |