Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2826 ATGTCACAGAATCAGATTCCTGATCTTTCTCTACAAATTAGTCTTCCAAACAGTGCTGTTTCATCAATTTGCGCAACAACAAATGAAGTTGATGATTTGGATTCTCCTTTTGATATATGGAAAAATGTTCATGAAGGTTTCAAATCTCATAGTGATGGTTTTTCATCTTCGTTCAAGAAAAATGGTGATACTTTTCAAAGAACTGATGATACAGAACTTTCATTAACAACAACAACAACACCAACAACAACTCCTTCTGAAGCTGAGAGTCCTTGGAAGAGAAAAAACTTCGTTAGATTAAGACCCTTTAATGGAATCCCTTACAATCCTCCAATATTAGAGAAAGATTCAAGTTTTTCTCTTTATCCTTCTTGTTCTTCTGGTAATAGTGGTGTTGAGGGTGTTAAGCAAGTTTCGAGGTTTAACGGGATAACTATGGAGAGTTTAAGAGCTCACAAGTTTCAATACTTGAATTTGAATCAACATCAAATTCTACAACAGCAACAACAGCAGCAACAACAACAGTTTGGAAATTCCGAGTTTGGAAATGGATTTGTAAGGTCAAGAATGATGATGCCAAGGCAACAAAGTAATAAGAGGAACACAAGGGCTCCGAGGATGCGTTGGACTAGTTCGCTTCATAATCGATTCGTTCATGCCGTTGAGCTTCTCGGCGGCCATGAAAGAGCAACACCAAAGTCAGTTTTGGAGCTAATGGATGTGAAAGATCTAACACTAGCTCATGTGAAGAGCCATTTACAGATGTATAGAACTGTTAAAAACACTGACAAGCCAGCAGCTTCTTCAGATGGAGATGAGAATTTCATGTCCCTAACACCACCTCATAATCGAAATAATCTATCTCTAGATCATGATATTAGCTTCATTTCCAATAATTTATGGGGAAATTCATCTTCAAGTAAAGGAACATGGACACAAGGTAGTTCAAGAGATTTTGATGAGCATTGTACAGAAGAAATCCTATCATCTCAGCACATTGGAAACTTTCCTCAGGTAAACAACTATACACAATCAAGAAGCTTCAAGGATCAAAACATAGACTGTCAGAAGAATCCAAACTTGGAGTTCACCTTAGGGAGATCAAATTAA 1110 0.3721 MSQNQIPDLSLQISLPNSAVSSICATTNEVDDLDSPFDIWKNVHEGFKSHSDGFSSSFKKNGDTFQRTDDTELSLTTTTTPTTTPSEAESPWKRKNFVRLRPFNGIPYNPPILEKDSSFSLYPSCSSGNSGVEGVKQVSRFNGITMESLRAHKFQYLNLNQHQILQQQQQQQQQQFGNSEFGNGFVRSRMMMPRQQSNKRNTRAPRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSDGDENFMSLTPPHNRNNLSLDHDISFISNNLWGNSSSSKGTWTQGSSRDFDEHCTEEILSSQHIGNFPQVNNYTQSRSFKDQNIDCQKNPNLEFTLGRSN* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2826 369 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 138 369 - -
Psa1g2826 369 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 4 147 - -
Psa1g2826 369 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 205 258 IPR006447 GO:0003677
Psa1g2826 369 SUPERFAMILY Homeodomain-like 203 259 IPR009057 -
Psa1g2826 369 Gene3D - 204 261 - -
Psa1g2826 369 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 138 369 IPR044847 GO:0000976|GO:0006355|GO:0010158
Psa1g2826 369 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 4 147 IPR044847 GO:0000976|GO:0006355|GO:0010158
Psa1g2826 369 Pfam Myb-like DNA-binding domain 206 257 IPR001005 -
Psa1g2826 369 MobiDBLite consensus disorder prediction 63 91 - -
Psa1g2826 369 MobiDBLite consensus disorder prediction 63 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2826 Psa-Chr1 245221163 245229476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2826 184 367 G2-like Transcription Factor Family AT5G16560 50.990 2.58e-45 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa1g2826 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2826 - - cam:101493712 436.032