Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa1g2819 | ATGGAAGGAGGAGGAATGTTATCATCATCATCATCACCACATTCACAAAACTATATCTACAGAGAGTGTTTAAGAAACCATGCAGCCAGCCTCGGAAGCTACGCAACCGACGGCTGCGGAGAATTCACCGTCGACGACACTTCAGTATCAGCAGCCAACAGTCTCCAATGTGCAGCCTGTGGCTGTCACCGGAACTTCCATCGCAAGATAACCGCGACATATGCGACGATGGCGCGAGATAACGCCATTGTGGCAGTGTCGGATCAGGTGATGGAATATTCCGGTGGTGGAGATGGGAGGAGGAAGAGGTACAGGTCAAAATTCACGGCGGATCAGAAGGAGAAGATGCTGGGGTTTGCTGAGAAGCTAGGGTGGAAGTTGCAGAGGAAGGAACTTGATGAAGAAATTGAAAGGTTTTGTGAGAGTGTTGGTGTGAGTAGGCAGGTTTTTAAGGTTTGGATGCATAATCATAAGAATTCTTGTTTCTCTAATTCTTCTGATCCTTCTGCTGGTAATGCTAATTCTTCTCTTACTCAGTAG | 540 | 0.4704 | MEGGGMLSSSSSPHSQNYIYRECLRNHAASLGSYATDGCGEFTVDDTSVSAANSLQCAACGCHRNFHRKITATYATMARDNAIVAVSDQVMEYSGGGDGRRKRYRSKFTADQKEKMLGFAEKLGWKLQRKELDEEIERFCESVGVSRQVFKVWMHNHKNSCFSNSSDPSAGNANSSLTQ* | 180 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa1g2819 | 179 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 20 | 69 | IPR006456 | - | |
Psa1g2819 | 179 | SUPERFAMILY | Homeodomain-like | 88 | 159 | IPR009057 | - | |
Psa1g2819 | 179 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 101 | 159 | IPR006455 | - | |
Psa1g2819 | 179 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 20 | 70 | IPR006456 | - | |
Psa1g2819 | 179 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 16 | 167 | - | - | |
Psa1g2819 | 179 | Pfam | ZF-HD protein dimerisation region | 18 | 70 | IPR006456 | - | |
Psa1g2819 | 179 | Gene3D | - | 86 | 165 | - | - | |
Psa1g2819 | 179 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 11 | 16 | 167 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa1g2819 | Psa-Chr1 | 243522656 | 243523918 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa1g2819 | 18 | 166 | ZF-HD Transcription Factor Family | AT5G65410 | 40.000 | 1.99e-40 | 136 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | zf-HD | Psa1g2819 | ZF-HD_dimer | 3.7e-25 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa1g2819 | - | - | gmx:547765 | 234.187 |