Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2819 ATGGAAGGAGGAGGAATGTTATCATCATCATCATCACCACATTCACAAAACTATATCTACAGAGAGTGTTTAAGAAACCATGCAGCCAGCCTCGGAAGCTACGCAACCGACGGCTGCGGAGAATTCACCGTCGACGACACTTCAGTATCAGCAGCCAACAGTCTCCAATGTGCAGCCTGTGGCTGTCACCGGAACTTCCATCGCAAGATAACCGCGACATATGCGACGATGGCGCGAGATAACGCCATTGTGGCAGTGTCGGATCAGGTGATGGAATATTCCGGTGGTGGAGATGGGAGGAGGAAGAGGTACAGGTCAAAATTCACGGCGGATCAGAAGGAGAAGATGCTGGGGTTTGCTGAGAAGCTAGGGTGGAAGTTGCAGAGGAAGGAACTTGATGAAGAAATTGAAAGGTTTTGTGAGAGTGTTGGTGTGAGTAGGCAGGTTTTTAAGGTTTGGATGCATAATCATAAGAATTCTTGTTTCTCTAATTCTTCTGATCCTTCTGCTGGTAATGCTAATTCTTCTCTTACTCAGTAG 540 0.4704 MEGGGMLSSSSSPHSQNYIYRECLRNHAASLGSYATDGCGEFTVDDTSVSAANSLQCAACGCHRNFHRKITATYATMARDNAIVAVSDQVMEYSGGGDGRRKRYRSKFTADQKEKMLGFAEKLGWKLQRKELDEEIERFCESVGVSRQVFKVWMHNHKNSCFSNSSDPSAGNANSSLTQ* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2819 179 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 20 69 IPR006456 -
Psa1g2819 179 SUPERFAMILY Homeodomain-like 88 159 IPR009057 -
Psa1g2819 179 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 101 159 IPR006455 -
Psa1g2819 179 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 70 IPR006456 -
Psa1g2819 179 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 167 - -
Psa1g2819 179 Pfam ZF-HD protein dimerisation region 18 70 IPR006456 -
Psa1g2819 179 Gene3D - 86 165 - -
Psa1g2819 179 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 16 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2819 Psa-Chr1 243522656 243523918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2819 18 166 ZF-HD Transcription Factor Family AT5G65410 40.000 1.99e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Psa1g2819 ZF-HD_dimer 3.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2819 - - gmx:547765 234.187