Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2816 ATGTTAGCTAATAGCTTATCTCCTTCTGAACCTTTTTCTTGCAATGAAAATGGTACATCTTCCAATAATAAAAGAAAACGAAGACCCGCCGGTACTCCAGATCCAGATGCAGAAGTGGTGTCTCTCTCACCAAAAACATTGTTGGAATCAGATCGTTATGTATGTGAGATCTGCAACCAAGGATTCCAAAGGGACCAAAATTTGCAGATGCATAGAAGAAGGCATAAAGTACCATGGAAATTACTCAAGAGAGAAACACCAGTTGTTAGAAAACGAGTTTTTGTTTGTCCTGAACCAACTTGTTTGCACCATGATCCTTGTCATGCTCTAGGTGATCTTGTTGGTATCAAAAAACATTTTAGAAGAAAACATAGTAATCATAAACAATGGGTTTGTGAAAGATGTTCCAAAGGTTATGCAGTGCAATCTGATTATAAAGCTCATCTCAAAACTTGTGGTACTAGAGGTCATTCTTGTGATTGCGGTCGCGTCTTCTCAAGGGTTGAGAGTTTTATTGAGCATCAAGATGCTTGTAACATGGGAAGGATCCATAATTCAGAATCTCAACCAATACAAACACCAACTGCATGTTTATCAAGAACTGCTTCAAGTCCAAGTCCATCAAGTGAAACAAATTTCACCAATTGTCCATGGCAAACAAGGCTTCAAGTAATGCAAAATTCGATAAAAGAAAAACCAATATTCATGAACCCTATTATTACTCCTATTACTACTATTACACCTTCTTCTCAAATAACTTTGTCCAAGAACAATAAACTTGTGCTTCATCCAAACTTGGAACTTCAACTCTCCACCACAAACAACGCCAACAACTTCAGTATGAGTCTGGCACCAGACACGCCTTCGATCAGAAGTATCAGTGCTACAGAGGCTATTCAGAAGGCTAATCGATCGACTCAGTTGCATCTTGCAATAGGGTCGTCAGAGATGAGCCATCAAGAGAGAAATGAATCGAACAATTTTAGAAACAACTCATACTCATCGCCGAAAGAGAGTAGCAATAGCAATGAGAAGGTTCAATCAACAAACAGCATGGCTTTGTTTAAGGTTCAAGAACAAACAAAGGAACATCTAAGGATAGCCATGGCTGAAAAATCTTATGCTGAAGATGCAAGGAAACAAGCAAAGAAACAAATTGAAATGGCTGAACAAGAATTCAACAATGCAAAGAGAATAAGACAACAAGCACAAAGTGAACTTGATAAAGCCTATGGATTGAAACAACATGCAATAAGGAAAATCAATTCAACTATGCTTCAAATCACTTGTCAAGCTTGCAAACAACAGTTTCAACATGAAGATAACTCTTTGGTTTTCAGCTATGTTTCTTCTGCCATAACAACTGAAGGTGGTGAAATAGAAAATGATGATGGAAAAGGAAAAACAACAACTAACTAA 1419 0.3756 MLANSLSPSEPFSCNENGTSSNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRIHNSESQPIQTPTACLSRTASSPSPSSETNFTNCPWQTRLQVMQNSIKEKPIFMNPIITPITTITPSSQITLSKNNKLVLHPNLELQLSTTNNANNFSMSLAPDTPSIRSISATEAIQKANRSTQLHLAIGSSEMSHQERNESNNFRNNSYSSPKESSNSNEKVQSTNSMALFKVQEQTKEHLRIAMAEKSYAEDARKQAKKQIEMAEQEFNNAKRIRQQAQSELDKAYGLKQHAIRKINSTMLQITCQACKQQFQHEDNSLVFSYVSSAITTEGGEIENDDGKGKTTTN* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2816 472 MobiDBLite consensus disorder prediction 1 40 - -
Psa1g2816 472 MobiDBLite consensus disorder prediction 1 20 - -
Psa1g2816 472 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Psa1g2816 472 Pfam Zinc finger, C2H2 type 53 75 IPR013087 -
Psa1g2816 472 MobiDBLite consensus disorder prediction 315 347 - -
Psa1g2816 472 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 456 - -
Psa1g2816 472 SUPERFAMILY beta-beta-alpha zinc fingers 52 150 IPR036236 -
Psa1g2816 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 75 IPR013087 -
Psa1g2816 472 Coils Coil 372 406 - -
Psa1g2816 472 Gene3D Classic Zinc Finger 31 93 - -
Psa1g2816 472 PANTHER OS03G0310200 PROTEIN 1 456 IPR039288 GO:0009630
Psa1g2816 472 SMART c2h2final6 94 124 IPR013087 -
Psa1g2816 472 SMART c2h2final6 53 75 IPR013087 -
Psa1g2816 472 SMART c2h2final6 130 157 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2816 Psa-Chr1 243397724 243401746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2816 16 462 C2H2 Transcription Factor Family AT2G01940 51.178 1.75e-131 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa1g2816 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2816 K25871 - gmx:100785333 642.884