Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2779 ATGGCTGAGTTTGGGACAGATGAAGTGCCAATGTTGCCAGATACTAATCCAAAACAATCAAATGAACACGATGATTCAAAATTCAAAACTCGTGTTTCTAGAACGCGAAGTGTATCGATTTCCATTCCTATGATTCCTATTGATCCATACGAAACAGAAACTAATCTTAAGAGACACACCGGTCCTCTGAGGAGTAAAAGGAAAACACAATATAATCCAATGAGTTGTCCATTATATGTTACTGATACATCTGGAAATCTTTTTCGGAAAAATATAATCGCGCCAGTGAGCAACGATGTGGAAAGTAAGACAGAAAAGTTTCCTTTAGGTGCCACGAACGAACACGATTTGCAGAATAACTATGCTAATAAAAATGAACATTTAGTAAGATCTGGTCAGTTGGGAATGTGTAATGATCCATACTGTACAACCTGTCCGGCTTACTTCAAGGCTACTCAACAAAGGGATTCGAAAAACTCGCGTTTGTTCAATCCTAAGTTTCAGAATGTTCTCTATGGAGATGCCAAGGATTGGGCAAGAAGAATTTTTGATTTCTTGACTCCAAATGTACCTAGAGTTATGAATCCACATAATAAACTTGTACAACAATGGAATAAGTTTTTTGCAATTTGTTGTTTGGTGGCGATTTTCGTCGATCCATTATTTTTCTTCTTGCTCTATGTGAATAAGGTACAAAAATGTATTGTTATTAACTCAACTATGACAACAGTGCTTGTTATACTTAGAAGTGTGAATGACTTCATACATTCCCTAAATATTATTCTTCAGTTTAGGTTGGCTTATGTGGCGCCCGAGTCTAGGGTGGTTGGTGCCGGAGAGTTAGTTGACCATCCTAAGAAAATAGCTCTTCACTATCTTCACACATATTTTCTTTTTGATCTATTTGTTGTACTTCCACTTCCTCAGATGATTATATTGTTTGTCTTACCAAAACACTTGGGAACATCAGGAGCAAATTACGCAAAGAATCTTTTGCGCGCTGTCATCCTTGCTCAGTACATTCCCAGATTGTGTAGATTTCTCCCTATGCTAATTTCTCCAACCGGATTCATCTTCGAGTCAGCGTGGGCGAGTTTCTTCATAAATCTTTTTACCTTTATGCTATCTGGCCATGTTGTTGGATCATGGTGGTACCTCTTCGGTTTGCAGAGGGTTAATCAATGTCTACGAAATGCCTGCAAGAAAACATATTTTGACGAATGCTCAAAATTCATTGATTGTGGACATGGAAGTATTGAGGAACATCGAAATGAAACAAATTGGACTAATTGGAAGATAGATGACAATGCAAGTGCTTGTTTTACAGAAGACGGTTTTGAGTATGGGATCTATCTTAAAGCTGTCAACCTTACTACAAAACATAATGTGATCACAAGATATGTATATTCATCATTTTGGGGATTCCAGCAAATTAGTACTCTAGCTGGAAATTTGACACCAAGCTATTTTATTTGGGAAGTCCTTTTCACAATGGGAATCATTGGATTAGGACTCTTGCTCTTTGCTCTTCTCATCGGAAACATTCAGAACTTTCTTCAGGCTCTTGGAAGAAGGAGGCTAGAAATGTCACTTCGACAACGTGATGTTGAACAATGGATGAGCCATAGGCGCTTAGGAGAAGATCTGAGAAGGAGAGTGCGACAAGCCGAACGCTATAATTGGGCTGCAACTAGAGGAGTGAATGAAGAAATACTCATGGAGAATTTGCCTGAAGATCTTCAGAGGGAGATCAGGCGCCACCTCTTTAAATTTGTTAAGAAAGTTCGAATTTTCTCCTTGATGGATGAGCGTATCTTGGATGCCATTTGCGAGAGACTAAGACAAAAAATATATATCAAAGGAAGCAAAGTTTTGTACGATGGTGGCTTAGTAGAGAAGGTGGTTTTTATCGTGCGGGGGAAATTAGAGAGTATAGGCGAAGATGAAATTAGAGTTCCACTATCCGAAGGCAACGTTTGCGGTGAAGAACTTCTTACATGGTGTCTTGAGCATACTTCAGGAAACAAAGTTTGTGGAAAAACAAGAATTCCAAGACAAAGGTTGATTAGCAATAGGACAGTATTGTGCCTAACAAATGTGGAGGCGTTTTCCATTAGAGCAGCAGACCTTGAAGAAGTTACAAAGCTTTTCGCAAGATTCTTGAGAAGTCCGGGTGTTCAAGGAGCCATAAGGTATGAATCGCCGTATTGGAGATGTCTTGCAGCAACACGAATCCAGGTTGCATGGAGATACAGAAAGAAACGTCTTTATCGCGCTGACACTTCACAATCAAACCCAAACCCGACAACTATTCCTACTAACTAG 2325 0.3923 MAEFGTDEVPMLPDTNPKQSNEHDDSKFKTRVSRTRSVSISIPMIPIDPYETETNLKRHTGPLRSKRKTQYNPMSCPLYVTDTSGNLFRKNIIAPVSNDVESKTEKFPLGATNEHDLQNNYANKNEHLVRSGQLGMCNDPYCTTCPAYFKATQQRDSKNSRLFNPKFQNVLYGDAKDWARRIFDFLTPNVPRVMNPHNKLVQQWNKFFAICCLVAIFVDPLFFFLLYVNKVQKCIVINSTMTTVLVILRSVNDFIHSLNIILQFRLAYVAPESRVVGAGELVDHPKKIALHYLHTYFLFDLFVVLPLPQMIILFVLPKHLGTSGANYAKNLLRAVILAQYIPRLCRFLPMLISPTGFIFESAWASFFINLFTFMLSGHVVGSWWYLFGLQRVNQCLRNACKKTYFDECSKFIDCGHGSIEEHRNETNWTNWKIDDNASACFTEDGFEYGIYLKAVNLTTKHNVITRYVYSSFWGFQQISTLAGNLTPSYFIWEVLFTMGIIGLGLLLFALLIGNIQNFLQALGRRRLEMSLRQRDVEQWMSHRRLGEDLRRRVRQAERYNWAATRGVNEEILMENLPEDLQREIRRHLFKFVKKVRIFSLMDERILDAICERLRQKIYIKGSKVLYDGGLVEKVVFIVRGKLESIGEDEIRVPLSEGNVCGEELLTWCLEHTSGNKVCGKTRIPRQRLISNRTVLCLTNVEAFSIRAADLEEVTKLFARFLRSPGVQGAIRYESPYWRCLAATRIQVAWRYRKKRLYRADTSQSNPNPTTIPTN* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2779 774 Pfam Ion transport protein 204 525 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Psa1g2779 774 Gene3D - 199 522 - -
Psa1g2779 774 ProSiteProfiles cAMP/cGMP binding motif profile. 597 665 IPR000595 -
Psa1g2779 774 CDD CAP_ED 597 713 IPR000595 -
Psa1g2779 774 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 5 762 - -
Psa1g2779 774 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 5 762 - -
Psa1g2779 774 Gene3D Jelly Rolls 595 719 IPR014710 -
Psa1g2779 774 MobiDBLite consensus disorder prediction 1 32 - -
Psa1g2779 774 SUPERFAMILY Voltage-gated potassium channels 196 525 - -
Psa1g2779 774 Gene3D Helix hairpin bin 525 589 - -
Psa1g2779 774 MobiDBLite consensus disorder prediction 18 32 - -
Psa1g2779 774 SUPERFAMILY cAMP-binding domain-like 525 720 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2779 Psa-Chr1 240670004 240676830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2779 7 675 Ion Channels AT3G17700 61.891 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2779 K05391 - gmx:100795955 1182.93