Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2776 ATGGTTAGGAAGAGGAGAACTGAGGGACCTGGTGGTGAAAGCTCCGATGGTCAACACCCTGCTGAGAGGAGTGTGCCGCCTCAACAACAGGCTGCTGTATCTGGAGGTGCAGGTCCCCAGGGAGGGGGAGGACCCCAAGGAGGGCGAGGCTGGGCTCCCCAGGGTGGACGTGGGGGTTATGGAGGTGGACGCGGTGGTCGTGGGATGCCCCAACAGCAATATGGTGGTGCACCCCCTGAGTATCAAGGAAGAGGTAGGGGAGGACATCATCAGCCCCAACAGCAATATGGTGCTCCCTCTGATTATCAAGGAAGGGGTAGGGGAGGACCTCCCCAGCATCAACAGCAGTATGGTGGTCCACCTGAGTATCAAGGCAGAGGCAGGGGAGGGCCTTCTCAGCAAGGAGGTCGTGGATATGGCGGTGGCCGAGGTGGATATGGTGGCGGTGTGGGCCCTGGTGGTGGCCATGACACAGTTCCTTCTTATGGAGGCCCACCTAGGCCACCAGCACCCGAGCTGCACCAAGCTACCTCAGTTCCTTCCGTGCCATATCCAGTTGCGGTGTCTCCTCCACCTGCACCAAGTGAGGCAAGTTCATCTTCTCATCCACCAGAAGTGTCTGAAGTGGAACAGGATCTGGGACAGATGACAATTCATTCTGAAGAGACTCCCGCGCCTCCTCCTGCTAGTAAATCATCACTGAGGTTTCCCCTTCGACCTGGAAAAGGGAGCTATGGCAAGAAATGTGTTGTTAAGGCAAACCACTTCTTTGCTGAGTTGCCAAAGAAAGACCTGCATCAGTATGATGTGACAATTACTCCAGAAGTGACTTCTAGAGGTGTGAACCGTGCTGTTATGGAGCAGCTTGTGAGACTGTATCGTGATTCTCACCTGGGAAAGAGACTTCCGGCTTATGATGGCCGTAAGAGCCTCTATACTGCAGGGCCACTTCCTTTTATTACGAAGGACTTTAGAATCACCCTGGTTGATGAAGATGATGGGTCAGGAGGGCAGAGGAGGGACAGGGAGTTTAAAGTTGTTATTAAACTTGCTGCACGTGCTGACCTTCACCACCTGGGACTCTTTTTGGAGGGGAGGCAGACTGATGCACCTCAGGAAGCTCTGCAGGTTCTTGACATTGTTCTCCGGGAGCTTCCTACTACCAGGTATTGTCCAGTGGGAAGATCATTTTATTCACCTGATCTAGGTAGAAGGCAGCCTTTGGGTGAGGGGTTGGAAAGTTGGCGGGGATTTTATCAAAGTATTCGTCCTACTCAAATGGGACTGTCTCTGAACATTGATATGTCTTCAACTGCATTTATTGAGCCACTGCCTGTGATAGATTTCGTTACCCAGTTGTTGAATAGGGATGTCTCATCCAGGCCTCTGTCTGATGCTGACCGAGTTAAGATAAAAAAAGCGCTCCGTGGAATCAAAGTTGAAGTAACACATCGTGGCAACATGAGGAGAAAATATCGTATTTCCGGTTTGACTTCACAAGCTACTAGAGAGCTGACTTTCCCTGTGGATGAGAGGGGGACTATGAAGTCTGTTGTTGAGTATTTCTTTGAGACCTATGGTTTCGTCATTCAACATACTCAGTGGCCTTGTTTGCAAGTGGGCAATACTCAGAGACCAAACTACCTTCCAATGGAGGTCTGCAAGATTGTCGAGGGGCAAAGGTACTCTAAACGATTGAATGAGCGACAAATTACCGCCCTGCTCAAAGTCACATGCCAACGTCCACTAGATAGGGAACGTGACATCATGCAGACTGTACATCATAATGCCTATCATGAGGATCCTTATGCTAAAGAATTTGGAATCAAAATCAGTGAAAAACTTGCTCAAGTCGAAGCTCGCATCCTTCCTGCGCCTTGGCTCAAATATCATGATACTGGTAGAGAAAAGGATTGTCTACCCCAAGTTGGCCAATGGAATATGATGAACAAGAAAATGGTCAATGGGGGAACAGTTAACAATTGGTTCTGCGTAAACTTTTCTAGGAATGTGCAAGACAGTGTTGCACGTGGATTTTGTGATGAACTTGCCCATATGTGTTACGTATCTGGCATGGCATTTAATCCTGAACCAGTAGTTCCTCCAGTAAGTGCCCGTCCTGACCAAGTTGAGAAGGTTCTGAAAACGCGTCATCATGATGCCAAGACCAAACTGCAGGGAAAGGATCTTGATCTGCTCATTGTCATTTTGCCTGATAATAATGGTTCTCTTTATGGTGACCTCAAGCGAATATGTGAGACTGACCTGGGGGTTGTTTCACAGTGTTGTTTGACTAAACATGTTTTTAAGATGAGCAAGCAGTACCTTGCAAATGTTTCCTTGAAAATAAATGTAAAGGTTGGGGGTAGGAATACTGTTCTGGTTGATGCACTTTCACGACGCATACCACTAGTCAGTGACAGACCTACTATTATATTTGGAGCTGATGTGACTCATCCACACCCTGGTGAAGATTCAAGTCCATCAATAGCAGCTGTTGTTGCTTCTCAAGATTGGCCAGAAATCACCAAGTATGCTGGTTTGGTTTGTGCCCAAGCACATAGGCAGGAGTTGATTCAAGACCTTTTCAAACAATGGCAAGATCCAGTCAGAGGAACATTGACTGGTGGAATGATCAAGGAACTTCTTATATCATTCCGGAGAGCAACTGGTCAAAAACCACAGCGCATCATATTTTACAGAGATGGAGTTAGCGAAGGGCAATTTTACCAAGTGCTGCTGTTTGAGCTTGATGCAATCCGGAAGGTAACCTTTTTTTGCATGTCTCTTTCAGAAATTTCAATGAATACTTTATTCTTATTATATGCCAGATGTACCCGTTCTGTTTCAATTGTGCCCCCTGCTTATTATGCTCATTTGGCTGCATTCCGAGCAAGGTTCTATATGGAACCCGAGACTTCTGATAGTGGATCTATGACAAGCGGTGCAGTTCCACGCGGTGGAATGGCAGCTGCTGCAGGGCGTAGTTCACGTGCCCCGGGTGCAAATGCTGCTGTTAGACCCTTGCCTGCGTTGAAGGAGAATGTCAAGAGGGTCATGTTTTATTGCTGA 3072 0.4785 MVRKRRTEGPGGESSDGQHPAERSVPPQQQAAVSGGAGPQGGGGPQGGRGWAPQGGRGGYGGGRGGRGMPQQQYGGAPPEYQGRGRGGHHQPQQQYGAPSDYQGRGRGGPPQHQQQYGGPPEYQGRGRGGPSQQGGRGYGGGRGGYGGGVGPGGGHDTVPSYGGPPRPPAPELHQATSVPSVPYPVAVSPPPAPSEASSSSHPPEVSEVEQDLGQMTIHSEETPAPPPASKSSLRFPLRPGKGSYGKKCVVKANHFFAELPKKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRDSHLGKRLPAYDGRKSLYTAGPLPFITKDFRITLVDEDDGSGGQRRDREFKVVIKLAARADLHHLGLFLEGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFFETYGFVIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPLDRERDIMQTVHHNAYHEDPYAKEFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWFCVNFSRNVQDSVARGFCDELAHMCYVSGMAFNPEPVVPPVSARPDQVEKVLKTRHHDAKTKLQGKDLDLLIVILPDNNGSLYGDLKRICETDLGVVSQCCLTKHVFKMSKQYLANVSLKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTLTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKVTFFCMSLSEISMNTLFLLYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVPRGGMAAAAGRSSRAPGANAAVRPLPALKENVKRVMFYC* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2776 1023 PANTHER PROTEIN ARGONAUTE 1A 935 1022 - -
Psa1g2776 1023 PANTHER PROTEIN ARGONAUTE 1A 132 923 - -
Psa1g2776 1023 MobiDBLite consensus disorder prediction 21 35 - -
Psa1g2776 1023 SUPERFAMILY PAZ domain 250 595 IPR036085 GO:0005515
Psa1g2776 1023 Gene3D - 622 795 - -
Psa1g2776 1023 Pfam Argonaute linker 2 domain 584 630 IPR032472 -
Psa1g2776 1023 Pfam Glycine-rich region of argonaut 118 224 IPR024357 -
Psa1g2776 1023 ProSiteProfiles Piwi domain profile. 732 922 IPR003165 GO:0003676
Psa1g2776 1023 SMART DUF1785_2 391 443 IPR014811 -
Psa1g2776 1023 Pfam N-terminal domain of argonaute 247 382 IPR032474 -
Psa1g2776 1023 Pfam Argonaute linker 1 domain 392 442 IPR014811 -
Psa1g2776 1023 MobiDBLite consensus disorder prediction 1 211 - -
Psa1g2776 1023 Gene3D paz domain 437 562 - -
Psa1g2776 1023 MobiDBLite consensus disorder prediction 184 198 - -
Psa1g2776 1023 CDD PAZ_argonaute_like 443 557 - -
Psa1g2776 1023 Pfam Piwi domain 733 923 IPR003165 GO:0003676
Psa1g2776 1023 Pfam Mid domain of argonaute 641 716 IPR032473 -
Psa1g2776 1023 Gene3D - 801 930 IPR036397 GO:0003676
Psa1g2776 1023 Gene3D - 931 1023 IPR036397 GO:0003676
Psa1g2776 1023 Pfam PAZ domain 448 573 IPR003100 GO:0005515
Psa1g2776 1023 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 132 923 - -
Psa1g2776 1023 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 935 1022 - -
Psa1g2776 1023 SUPERFAMILY Ribonuclease H-like 723 970 IPR012337 -
Psa1g2776 1023 ProSiteProfiles PAZ domain profile. 444 558 IPR003100 GO:0005515
Psa1g2776 1023 SMART PAZ_2_a_3 448 580 IPR003100 GO:0005515
Psa1g2776 1023 SMART Piwi_a_2 732 970 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2776 Psa-Chr1 240558639 240565350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2776 122 930 Eukaryotic Initiation Factors Gene Family AT1G48410 78.528 0.0 1278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2776 K11593 - gmx:100780375 1420.22