Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2746 ATGTCTTCCGCCGGCGGCAACCACAACCTTCACCCCGGCGGAAACTCCGACGAACTTCGTCAATACTTTTGCCACCAGTGCCAACGCACAGCCTTCATTTCAACCTCCACCGCCGATCTAATCTGTCCCAATTGCAACAGTACCTTCCTGGAGGAACTCGAAGCTCCAATCCCGAACCCTAACCCTAATCCCAACCCTATCCCTCCGTTCTTCTCCCACACCACCGACTTTCCCGCCGCAGGCTTCTCCTTTCCCCTCGTTTTCTCTGGTGGTGCCGCTCCTCAGCCATTCAATGATCTCTCCGCCTTGTTGTCGTCGTCCCCGTCTCAGCCTGCGCCTTTCGGCGAACCGTTTAACCCGGTCGCCTTCATCCAGAATTACCTTCAGAACATGAGGGCGGGAGGAGGCAATGTTCAGTTCTTCATCAACGACGGCGATGATGCGGCTCGTCAGTTTCGGTTTCCCGGCAACGCGAATCCGGGGGATTATTTCTTTGGACCGGGGCTTGAGGATCTGATCCAGCAATTGGCTGAGAACGATCCGAGTCGGCGTGGGACTCCTCCTGCGGCAAAATCTGCTGTGGAAAAACTCCCTGTTATCGAAGTTACCGGGGAGTTGCTGGAGTCCGATTCGTCTCAGTGTGCTGTGTGCAAAGACACATTTGTCCTTGGTGAAAAGGCCAAGCAGATGCCGTGTAAGCATATTTATCATGCTGATTGTATCTTGCCGTGGCTGGAAATGCATAATTCTTGCCCTGTTTGTCGTCATGAGTTGCCCACCGATGATCCTGATTATGAGCAGAGGGCTCAGAGCGGTGGAGGTGATTCTGGTGCTGCTGGTGGAGATGATTCTGTGAGGAGGTTTAGGGTGTCTTTGCCGTTAATGCCATTTAGGGTACCTTCTTCTGCTGCGGGGACAAGTAATGCTGGGAATGTTGACAACGATAATAACAGCAATAGCAATAGTGAGCAGTCCAATACTGAGAATAGGGGCAATCAGAATTTTGGGTCAGAGACCAGACAAGAAGATCTCGACTGA 1038 0.5241 MSSAGGNHNLHPGGNSDELRQYFCHQCQRTAFISTSTADLICPNCNSTFLEELEAPIPNPNPNPNPIPPFFSHTTDFPAAGFSFPLVFSGGAAPQPFNDLSALLSSSPSQPAPFGEPFNPVAFIQNYLQNMRAGGGNVQFFINDGDDAARQFRFPGNANPGDYFFGPGLEDLIQQLAENDPSRRGTPPAAKSAVEKLPVIEVTGELLESDSSQCAVCKDTFVLGEKAKQMPCKHIYHADCILPWLEMHNSCPVCRHELPTDDPDYEQRAQSGGGDSGAAGGDDSVRRFRVSLPLMPFRVPSSAAGTSNAGNVDNDNNSNSNSEQSNTENRGNQNFGSETRQEDLD* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2746 345 MobiDBLite consensus disorder prediction 301 339 - -
Psa1g2746 345 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Psa1g2746 345 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 13 302 - -
Psa1g2746 345 SMART ring_2 214 254 IPR001841 -
Psa1g2746 345 CDD RING-H2_RNF126_like 213 255 - -
Psa1g2746 345 MobiDBLite consensus disorder prediction 299 345 - -
Psa1g2746 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 261 IPR013083 -
Psa1g2746 345 SUPERFAMILY RING/U-box 194 261 - -
Psa1g2746 345 Pfam zinc-ribbon 21 53 IPR039525 GO:0061630
Psa1g2746 345 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 13 302 - -
Psa1g2746 345 Pfam Ring finger domain 213 255 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2746 Psa-Chr1 236636441 236640501 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2746 91 267 C3H Transcription Factor Family AT5G01980 40.113 1.86e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2746 K11982 - mtr:MTR_6g079660 476.863