Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2739 ATGTTCGCCGAGCATGGGATTCCCGCTTTAGTACTTCTATTACTTGTACCAACTCGGAGACTAACTGTGCACCTTATGTTCGCCGAGCATGGTTATAGGGCACCGCGATGGGCTAGTGTGAACTTAGGAATTTTCATTTGCATGCAGTGTTCAGGGATTCATCGGAGTCTTGGAGTGCATATATCGAATGTGAGGTCCACAACTTTGGATACATGGCTACCAGATCAAGTTTCTTTCATGCAATTTATGGGTAATGTGAAGTCAAATAAGCACTGGGAGGCTAAACTACCACCGGATTTTGACAGAAATGGATATGGAATCGAGAAATTTATCCGTGCCAAGTATGTGGAGAAAAGATGGGCTTTGCAAGGCAAACTACAATCAGCTCCGAAGTCGACTGAAATCTTCTTTGAGATCAAAGAGTTACCAGTTGCGGCGGCCAAGAATGGTATTCAGAAAAACAGGAGATTGTCTCTTGAGGAAAGCATTCTAGTGAATCACATGGCACAGATTCGGCCTCCAATAGCGAAATCTCACGAGGGCCCCTTAGATTTACCGATGATGATTTCACCACCACTATTAAAGAGGCCATCGACATCACTTGATTTTGATAACGTCATTGGAAATAGCAACAGTACCATCGATCTTTTTAACTTGCTTTCCATCCACGACGATAAGCATAATACCTCAACTACACCTCCTAGCTGGACAACATTTGATTGTAAGATTACATTACTTGTATNTAAACTACCACCGGATTTTGACAGAAATGGATATGGAATCGAGAAATTTATCCGTGCCAAGTATGTGGAGAACAGATGGGCTTTGCAAGGCAAACTACAATCAGCTCCGAAGTCGACTGAAATCTTCTTTGAGATCAAAGAGTTACCAGCTGCGGCGGCTAAGAATGGTATTCAGAAAAACAGGAGATTGTCTCTTGAGGAAAGCATTCTAGTGAATCACATGGCACAGATTCGGCCTCCAATAGCGAAATCTCACGAGGGCCCCTTAGATTTACCGATGATGATTTCACCACCACTATTAAAGAGGCCATCGGCATCACTTGATTTTGATAACGTCATTGGAAATAGCAACAGTACCATCGATCTTTTTAACTTGCTTTCCATCCACGACGATAAGCATAATACCTCAACTACACCTCCTAGCTGGACAATATTTGATTGTAAGATTACATTACTTGTATCACAAGTTAAAAAGAATTTTGCCTAG 1230 0.4195 MFAEHGIPALVLLLLVPTRRLTVHLMFAEHGYRAPRWASVNLGIFICMQCSGIHRSLGVHISNVRSTTLDTWLPDQVSFMQFMGNVKSNKHWEAKLPPDFDRNGYGIEKFIRAKYVEKRWALQGKLQSAPKSTEIFFEIKELPVAAAKNGIQKNRRLSLEESILVNHMAQIRPPIAKSHEGPLDLPMMISPPLLKRPSTSLDFDNVIGNSNSTIDLFNLLSIHDDKHNTSTTPPSWTTFDCKITLLVXKLPPDFDRNGYGIEKFIRAKYVENRWALQGKLQSAPKSTEIFFEIKELPAAAAKNGIQKNRRLSLEESILVNHMAQIRPPIAKSHEGPLDLPMMISPPLLKRPSASLDFDNVIGNSNSTIDLFNLLSIHDDKHNTSTTPPSWTIFDCKITLLVSQVKKNFA* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2739 409 SMART arf_gap_3 19 126 IPR001164 GO:0005096
Psa1g2739 409 SUPERFAMILY ArfGap/RecO-like zinc finger 32 122 IPR037278 -
Psa1g2739 409 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 33 245 - -
Psa1g2739 409 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 249 408 - -
Psa1g2739 409 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Psa1g2739 409 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Psa1g2739 409 PRINTS HIV Rev interacting protein signature 64 85 IPR001164 GO:0005096
Psa1g2739 409 CDD ArfGap 33 115 - -
Psa1g2739 409 Pfam Putative GTPase activating protein for Arf 32 122 IPR001164 GO:0005096
Psa1g2739 409 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 249 408 IPR044520 GO:0005096
Psa1g2739 409 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 33 245 IPR044520 GO:0005096
Psa1g2739 409 Gene3D Arf GTPase activating protein 20 127 IPR038508 -
Psa1g2739 409 ProSiteProfiles ARF GTPase-activating proteins domain profile. 28 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2739 Psa-Chr1 236437361 236439652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2739 28 115 C2H2 Transcription Factor Family AT4G05330 45.745 1.75e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2739 K12486 - gmx:100802691 315.079