Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2738 ATGGGATTCCCGCTTTTGTCTCATTCGCCATCGCCAACCACGCTTCCCCTCTCAATTATTGGTTCCACCCACCAAATCAAAAACCTCACAACTCCCCAAAACTCCATCTTTTCACCTTCCCGTTTGCTCTTCCTTCGTTGTCATATCGTGTCTCATCGCCGCCACATAAACAGCGAGGGTTTTGCAGCAAACATGAACGGGAAAGCTTCTGTTTCTAAGGAGCTTCATGCCAAACACACCAAGATCTTAGAAGGACTTCTTAAGCTACCTGACAACAAGGAATGTGCAGACTGTTGGACCAACTTAAACTACTACAATAGTTCATTCAATTCAATAGGTCAACCAAAAGATAGAACAAGCAGGAAGGCAAAGAATCTGTCGTGGAGAATGAATGGGATTCCCGCTTTTGTTCTCGCATTCGCCATCGCCAACCACGCTTCCCCTCTCATTATTGGCTCCCACCAAATCAAATGTTCAGGGATTCATCGGAGTCTTGGAGTGCATATATCGAATGTGAGGTCCACAACTTTGGATACATGGCTACCAGATCAAGTTTCTTTCATGCAATTTATGGGTAATGTGAAGTCAAATAAGCACTGGGAGGCTAAACTACCACCGGATTTTGACAGAAATGGATATGGAATCGAGAAATTTATCCGTGCCAAGTATGTGGAGAAAAGATGGGCTTTGCAAGGCAAACTACAATCAGCTCCGAAGTCGACTGAAATCTTCTTTGAGATCAAAGAGTTACCAGTTGCGGCGGCCAAGAATGGTATTCAGAAAAACAGGAGATTGTCTCTTGAGGAAAGCATTCTAGTGAATCACATGGCACAGATTCGGCCTCCAATAGCGAAATCTCACGAGGGCCCCTTAGATTTACCGATGATGATTTCACCACCACTATTAAAGAGGCCATCGACATCACTTGATTTTGATAACGTCATTGGAAATAGCAACAGTACCATCGATCTTTTTAACTTGCTTTCCATCCACGACGATAAGCATAATACCTCAACTACACCTCCTAGCTGGACAACATTTGATT 1045 0.4373 MGFPLLSHSPSPTTLPLSIIGSTHQIKNLTTPQNSIFSPSRLLFLRCHIVSHRRHINSEGFAANMNGKASVSKELHAKHTKILEGLLKLPDNKECADCWTNLNYYNSSFNSIGQPKDRTSRKAKNLSWRMNGIPAFVLAFAIANHASPLIIGSHQIKCSGIHRSLGVHISNVRSTTLDTWLPDQVSFMQFMGNVKSNKHWEAKLPPDFDRNGYGIEKFIRAKYVEKRWALQGKLQSAPKSTEIFFEIKELPVAAAKNGIQKNRRLSLEESILVNHMAQIRPPIAKSHEGPLDLPMMISPPLLKRPSTSLDFDNVIGNSNSTIDLFNLLSIHDDKHNTSTTPPSWTTFD 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2738 348 Gene3D Arf GTPase activating protein 61 235 IPR038508 -
Psa1g2738 348 SUPERFAMILY ArfGap/RecO-like zinc finger 156 230 IPR037278 -
Psa1g2738 348 CDD ArfGap 83 223 - -
Psa1g2738 348 ProSiteProfiles ARF GTPase-activating proteins domain profile. 80 238 IPR001164 GO:0005096
Psa1g2738 348 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 65 100 IPR044520 GO:0005096
Psa1g2738 348 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 156 348 IPR044520 GO:0005096
Psa1g2738 348 Pfam Putative GTPase activating protein for Arf 156 230 IPR001164 GO:0005096
Psa1g2738 348 SMART arf_gap_3 144 234 IPR001164 GO:0005096
Psa1g2738 348 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 65 100 - -
Psa1g2738 348 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 156 348 - -
Psa1g2738 348 PRINTS HIV Rev interacting protein signature 151 168 IPR001164 GO:0005096
Psa1g2738 348 PRINTS HIV Rev interacting protein signature 172 193 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2738 Psa-Chr1 236419928 236422452 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2738 83 223 C2H2 Transcription Factor Family AT4G05330 31.293 1.28e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2738 K12486 - gmx:100802691 327.791