Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2720 ATGGCTGATGCTCATGATACTGATAAGAACATTGAGGTGTGGAAAATCAAGAAATTGATCAAGGCTCTTGAAGCTGCCAGAGGAAATGGGACGAGTATGATTTCCCTTATCATGCCCCCGCGTGATCAGATAGCTCGTGTTACCAAGATGCTTGGCGATGAGTTTGGAACTGCTTCAAACATCAAAAGTAGGGTCAACCGACAGTCTGTGCTTGGTGCAATCACTTCTGCTCAGCAGAGGCTTAAGCTTTATAACAAGGTTCCTCCCAATGGGCTTGTTTTGTATACTGGCACAATTGTGACTGATGATGGAAAGGAGAAAAAGGTGACCATTGATTTTGAACCATTTAGACCTATCAATGCTTCTCTCTATCTTTGTGACAACAAGTTTCACACTGAAGCTCTAAATGAGCTCCTGGAATCTGATGACAAGTTTGGATTTATTGTCATGGATGGTAATGGCACCCTGTTTGGAACTTTGAGTGGTAATACAAGAGAGGTGCTTCACAAGTTTAGTGTGGATCTTCCAAAGAAACATGGAAGAGGAGGGCAATCAGCCCTACGTTTTGCCCGTCTTCGGATGGAGAAGCGTCATAACTATGTAAGGAAGACTGCTGAGCTTGCAACCCAGTTTTATATCAATCCTGCTACCAGCCAGCCTAATGTTTCTGGATTAATACTTGCTGGTTCTGCTGATTTCAAAACCGAGCTTAGTCAGTCAGATATGTTTGATCCCCGTCTTCAGGCAAAAATACTTAATGTTGTAGATGTTTCGTATGGAGGGGAGAATGGGTTTAATCAGGCTATTGAACTGTCTGCTGAAATTCTGTCTAATGTCAAGTTTATTCAGGAAAAACGATTGATTGGAAAATACTTCGAGGAAATCAGTCAGGATACAGGGAAGTATGTGTTTGGCGTTGATGATACTCTTCAAGCTCTGGATGCAGGAGCTGTTGAGACACTTATTGTTTGGGAAAATCTGGATATGACTAGGTACGTTTTAAAAAATAGTACTACCGGTGAAGTTGTCATTAAGCACTACAACAAGGAGCAGGAAGCCATCCAAAGCAATTTTAGAGATCCTGAAACCGCTGCTGATTATGAGGTTCAGGAAAAGCTGTCTCTGTTGGAGTGGTTTGCAAATGAATACAGACGATTTGGTTGCACTCTCGAGTTTGTTACCAATAAATCACAAGAAGGTTCACAGTTTTGCAGAGGTTTTGGTGGGATAGGTGGGATCTTGCGTTATCAGCTTGATATGAGAACATTTGACGATTTTTCTGATGATGGAGGAGAAAGGGAGGTCAAAATACCTGCACCAGTATGGGAGGTAGCTGCACGTGCTGCTGCTGCTCCTCCCGTTCCCCCTCTTCTGTCTGTGATGTTGCATGGAAAGTTTGACTGCAAAATGAGCTGCTTTACTCCGGAAGTGCTGTCTGATCTGAATTACTTCCTCACTTGTTTTCCCATTGTTCGATCGGCACTACAAACTTCAGCAACATTGCTGGCAACAGCTGGTGAAAACCTGTCATTTCCTACTCCTCTGCGATCTACTTGTATTCAGAAGGGCAAAAACAAAGTCATCCTCCCAAAAGAACACAACCTAGCATCAATGAAGTCTTGCGTGAACCAGTCTGTATATGTAATCTAG 1650 0.4285 MADAHDTDKNIEVWKIKKLIKALEAARGNGTSMISLIMPPRDQIARVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLQALDAGAVETLIVWENLDMTRYVLKNSTTGEVVIKHYNKEQEAIQSNFRDPETAADYEVQEKLSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRTFDDFSDDGGEREVKIPAPVWEVAARAAAAPPVPPLLSVMLHGKFDCKMSCFTPEVLSDLNYFLTCFPIVRSALQTSATLLATAGENLSFPTPLRSTCIQKGKNKVILPKEHNLASMKSCVNQSVYVI* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2720 549 SMART eRF1_1_2 4 140 IPR005140 -
Psa1g2720 549 Pfam eRF1 domain 1 18 138 IPR005140 -
Psa1g2720 549 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 1 432 - -
Psa1g2720 549 SUPERFAMILY Translational machinery components 142 276 - -
Psa1g2720 549 Pfam eRF1 domain 2 144 277 IPR005141 -
Psa1g2720 549 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 432 IPR004403 GO:0003747|GO:0006415
Psa1g2720 549 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
Psa1g2720 549 Pfam eRF1 domain 3 281 418 IPR005142 -
Psa1g2720 549 Gene3D - 279 434 IPR029064 -
Psa1g2720 549 Gene3D eRF1 domain 1 2 135 IPR024049 -
Psa1g2720 549 Gene3D eRF1 domain 2 136 277 IPR042226 -
Psa1g2720 549 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 13 417 IPR004403 GO:0003747|GO:0006415
Psa1g2720 549 SUPERFAMILY L30e-like 278 420 IPR029064 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2720 1 428 Eukaryotic Initiation Factors Gene Family AT3G26618 90.187 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2720 K03265 - gmx:100785916 820.076