Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2717 ATGGTTAACTTGTATTATCAGAGGAATTATTTGGATTTCTTTTTCTGTTTCTTTGATTCTTCAGAGAGTCAAATGGATGAGAATATTAAACTCTATATGTGGCTTGTACATTTCCTTCTTCTATATTGTGCCATTCAAAATCTTGGTTTTTTGGGAACTCATAGTGTCCAACAAGGTTTATCTGAACCACTATTAGATCAAAAATTTGAAACTAATCAAACAGGACTTGGCCATGCTACTTTTATCAGCAAGTTGGTTTTCTCTTGGATGAATTCTTTACTCATTTTAGGTTACTCAAAGCCATTAGATCTTGAAGAAATCCCTTCCCTTGTTTCTGAAGATGAAGCAAACATGGCCTATCAAAAATTTGTTCATGCCTGGAAATCACTTGTTAGAGAGAGAGCAAAGAATAATACAAAGAGTTTGGTTCTTTGGTCTATAGTTAGAACTTACTTAGGAGAAAACATATTAACAGCATTTTATGGATTAATCAGAACTGTTTCTGTTGCTGTTTCACCTCTAATACTTTATGCTTTTGTTAAATACTCAAATAGAACTGAGCCAGATCTTAGACAAGGTCTTTCCATAGTTGGTTTTTTGATTGTCACCAAAGTGTTGGAGTCTTTGTCTCAAAGACATTGGTTTTTTAACTCAAGGAGATCAGGGTTGAAAATGAGGTCAGCTCTGATGGTAGCAGTTTATCAAAAGCAGCTAAAGCTTTCTAACTCGGCCAGGACACGACACTCGGCTGGAGAAATTGTGAATTACATTGCTGTAGATGCTTATAGAATGGGAGAATTTCCATGGTGGTTTCATATGACATGGACTTGTGCATTGCAACTTGTTCTTTCCATTGGTGTCCTTTATGGTGTTGTTGGTATCGGTGCTCTTCCTGGCTTGGTCCCTCTTCTTATTTGCGGATTTCTTAATGTACCATTTGCAAAAATCCTACAAAATTGCCAGTCACAGTTTATGATTGCGCAGGACGAGCGTCTTAGATCGACTTCAGAGATTCTAAATAGTATGAAGATCATTAAGTTACAATCATGGGAAGAAAAGTTCAAGAATTTACTCCAGTCGCTACGGGATAAAGAGTTTTTATGGTTGTCTAAGGTGCAGACTTTGAAAGCTTTTGGTTCATTTCTTTATTGGATGTCTCCTACCGTTATTTCTGCTGTTGTTTTTATTGGATGTGCTGTTACCAAGAGTGCACCATTGAATGCTGAAACTAATTTTCACAGTTCTTGCAACTCTGAGGAACTTGGCAGAGCCTATGTGAATTTAGAAATCAAATGGAGACATAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGGAAATCATCACTTTTGTATGCAATACTTGGAGAAATTCATAAGATATCAGGAACTGTCAATTTAGGTGGCACTTTTGCCTATGTTTCCCAATCTTCATGGATACAGAGTGGAACAGTTCAAGATAATATACTCTTTGGCAAGCCAATGGACAGAACAAGATACGAAAAAGCAATTAAAGCTTGTGCTTTAGATAAGGATATCAATGATTTTAGCCATGGTGATCTTACAGAAATTGGTCAGAGAGGGATAAACCTGAGTGGAGGACAAAAACAAAGGATTCAGCTAGCTAGAGCAGTCTACAATGATGCTGATGTATATCTCCTTGACGATCCTTTCAGTGCAGTTGATGCACATACAGCTGCAATACTATTCAATGATTGTGTCATGACTGCTTTAAGAGAGAAAACAGTCATTCTAGTTACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATACAATCTTGGTAATGGAGGGTGGAAAAGTTATTCAATCAGGTAGTTATGAGAGTCTCCTAGCAGCAGGAACAGCCTTTGAACTACTTGTGAGTGCTCATAAAGACAAAATTACTGAGTTGGATCAAGATAATGAACATAAAAGAGGTTCTGAAAACGAAGTTTTGTCCAATCCTCAAAACTCTCATGGTTTTTATCTCACTAAGAATCAAAGTGAGGGAGAGATTTCTAGTATCAAGGATCCAATTGGTACACAACTTACACAAGAGGAAGAAAAAGTGATTGGTAATGTTGGATGGAAGCCATTCTGGGATTATATAAATTATTCCAAAGGGACATTCATGTTGTGTTTCATCATGTTAGCACTATCTGCTTTCATGGCATTTCAAACGGCATCAACCTTTTGGCTTGCTATAGCCATAGAAATTCCAAAAGTTACTAATGCCACCTTGATTGGAGTTTATACATTAGTTTCATTTTCCAGTGCTGCTTTTGTATATGTAAGGTCTTACTTGAATGCACTTCTTGGGTTAAAAGCTTCTACTGCTTTCTTCTCAAAATTCACTACAGCTATCTTCAATGCTCCAATGCTTTTCTTTGATTCAACTCCTGTAGGAAGGATTTTAACTAGAGCTTCATCAGATTTGAGTATTTTGGACTTTGATATACCTTCTTGCATCACCATTGTAGCAAGTGTAGCACTTGAAATTTTGGTGATAATTTGTATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCATTATACATTCAGCAATATTATCAAGCTACTGCAAGGGAACTGATACGGATCAATGGAACAACCAAAGCTCCAGTCATGAATTTTGCATCTGAGACATCACTTGGAGTGGTTACCTTACGAGCATTCAACATGGTTGACAGATTTTTCAAAAACTACTTAACACTTGTAGACAAAGATGCTTCGTTGTTCTTTCACTCCAATGCAGCAATGGAATGGGTAATCTTAAGGATTGAAGCACTTCAAAATTTGACTGTCATCACTGCATCTTTGTTGCTTATTCTACTTCCTCATGGATATGTATCCCCAGGCCTTGTGGGGCTGTCTCTTTCTTATGCTTTTAACTTGACAACAGCCCAAGTATTTTGGGGAAGATGGTTTAGCAACTTATCAAACTATATTATATCTGTTGAAAGAATCAAACAATTCATTCATATACCAGTTGAGCCTCCTGCCATTGTGGATAATAATCGGCCGCCATCTTCGTGGCCTTCCAAGGGAAGGATTGATCTTCAAGGCTTGGAGATCAGATATCGTCCTAATGCTCCATTAGTTCTTAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTAGGAGTTGTCGGAAGGACTGGAAGTGGAAAAAGTACACTAATCAGTGCTTTGTTTCGCTTAGTTGAGCCATCAAGAGGTGATATTTTCATAGATGGGTTGAACATTTGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACAAACCTGGACCCTCTTGGCCTGTACTCAGACGATGATATCTGGAAGGCTATAGAGAAATGTCAGCTTAAGGAAACAATCAGCAAGCTACCAAGTCTCTTGGACTCTTCTGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAACGCCAATTGTTTTGTCTTGGAAGAGTTCTACTGAAGAGAAACAAAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGACTCTGCTACAGATGCCATTTTACAAAGAGTAATCAGACAAGAATTTGAAGAATGTACGGTTATAACCGTGGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGGTTATGGTTTTATCTTATGGGAAACTGATGGAATACGATGAACCTTCAAAGCTAATGGATACAAACTCTTCATTCTCTAAGCTGGTGGCTGAATATTGGTCCAGTTGCAGGAAGAATTCATTCCCAAATATTAGCAAACAACAATAA 3831 0.3798 MVNLYYQRNYLDFFFCFFDSSESQMDENIKLYMWLVHFLLLYCAIQNLGFLGTHSVQQGLSEPLLDQKFETNQTGLGHATFISKLVFSWMNSLLILGYSKPLDLEEIPSLVSEDEANMAYQKFVHAWKSLVRERAKNNTKSLVLWSIVRTYLGENILTAFYGLIRTVSVAVSPLILYAFVKYSNRTEPDLRQGLSIVGFLIVTKVLESLSQRHWFFNSRRSGLKMRSALMVAVYQKQLKLSNSARTRHSAGEIVNYIAVDAYRMGEFPWWFHMTWTCALQLVLSIGVLYGVVGIGALPGLVPLLICGFLNVPFAKILQNCQSQFMIAQDERLRSTSEILNSMKIIKLQSWEEKFKNLLQSLRDKEFLWLSKVQTLKAFGSFLYWMSPTVISAVVFIGCAVTKSAPLNAETNFHSSCNSEELGRAYVNLEIKWRHKIAVCGPVGAGKSSLLYAILGEIHKISGTVNLGGTFAYVSQSSWIQSGTVQDNILFGKPMDRTRYEKAIKACALDKDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADVYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVIQSGSYESLLAAGTAFELLVSAHKDKITELDQDNEHKRGSENEVLSNPQNSHGFYLTKNQSEGEISSIKDPIGTQLTQEEEKVIGNVGWKPFWDYINYSKGTFMLCFIMLALSAFMAFQTASTFWLAIAIEIPKVTNATLIGVYTLVSFSSAAFVYVRSYLNALLGLKASTAFFSKFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPSCITIVASVALEILVIICIMVSVTWQVLIVAVPAMVASLYIQQYYQATARELIRINGTTKAPVMNFASETSLGVVTLRAFNMVDRFFKNYLTLVDKDASLFFHSNAAMEWVILRIEALQNLTVITASLLLILLPHGYVSPGLVGLSLSYAFNLTTAQVFWGRWFSNLSNYIISVERIKQFIHIPVEPPAIVDNNRPPSSWPSKGRIDLQGLEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDIFIDGLNICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDDIWKAIEKCQLKETISKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNKILVLDEATASIDSATDAILQRVIRQEFEECTVITVAHRVPTVIDSDMVMVLSYGKLMEYDEPSKLMDTNSSFSKLVAEYWSSCRKNSFPNISKQQ* 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2717 1276 CDD ABC_6TM_ABCC_D1 157 410 IPR044746 GO:0140359
Psa1g2717 1276 Pfam ABC transporter transmembrane region 710 969 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g2717 1276 Pfam ABC transporter transmembrane region 189 410 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g2717 1276 ProSitePatterns ABC transporters family signature. 530 544 IPR017871 GO:0005524
Psa1g2717 1276 SUPERFAMILY ABC transporter transmembrane region 696 1007 IPR036640 GO:0005524|GO:0016021
Psa1g2717 1276 CDD ABCC_MRP_domain2 1023 1243 - -
Psa1g2717 1276 Pfam ABC transporter 426 557 IPR003439 GO:0005524
Psa1g2717 1276 Pfam ABC transporter 1042 1190 IPR003439 GO:0005524
Psa1g2717 1276 CDD ABCC_MRP_domain1 426 605 - -
Psa1g2717 1276 SUPERFAMILY ABC transporter transmembrane region 144 399 IPR036640 GO:0005524|GO:0016021
Psa1g2717 1276 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1027 1259 IPR003439 GO:0005524
Psa1g2717 1276 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 426 1270 - -
Psa1g2717 1276 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 30 412 - -
Psa1g2717 1276 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 156 396 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g2717 1276 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 30 412 - -
Psa1g2717 1276 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 426 1270 - -
Psa1g2717 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 626 IPR027417 -
Psa1g2717 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1015 1258 IPR027417 -
Psa1g2717 1276 Gene3D ABC transporter type 1, transmembrane domain 674 1005 IPR036640 GO:0005524|GO:0016021
Psa1g2717 1276 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 713 975 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g2717 1276 Gene3D - 410 652 IPR027417 -
Psa1g2717 1276 Gene3D ABC transporter type 1, transmembrane domain 143 409 IPR036640 GO:0005524|GO:0016021
Psa1g2717 1276 SMART AAA_5 1051 1236 IPR003593 -
Psa1g2717 1276 SMART AAA_5 432 605 IPR003593 -
Psa1g2717 1276 CDD ABC_6TM_ABCC_D2 707 1000 IPR044726 GO:0140359
Psa1g2717 1276 Gene3D - 1008 1259 IPR027417 -
Psa1g2717 1276 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 406 628 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2717 Psa-Chr1 234761896 234774979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2717 436 848 Calmodulin-binding Proteins AT2G36910 22.581 1.52e-19 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2717 - - pvu:PHAVU_010G136900g 1786.16