Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2713 ATGGTGATGCCAAAGCCAATATTTTGCTTGGTCGCAATTTTTGTTGATCCATTATTTTTCTTCTCAATCTATGTGGACAAGCATGTTTTTAGTATTGTTATCAATTGGGAAGTGGCAAATATACTTGTTTTACTTAGAAGCATAACTGATGTTGTGTATTTCTTGAACATTCTTCTCAAAAGGAGAGTTCGGCAGGCTGAACGGTATAGTTGGGCTGCAACAAGAGGTGTTCCTGGAAAAATGGTTTTGGAGAATTTGCCAGAAGATCTCGTGACAGACATACGACGTCATCTCTTCAAATTTGTTAAAAAAGTTCGTATTTTTTTCCTGATGGATGAGGTTGAGCCTATCTTAGATCCCATTCGTGAGCGATTAGTACAAACGACATACTCCCTCCGAAGTAAAGTTTTGAGTCAGGGCGGTCTAGTGCAGAAGATGGTGTTTATTGTGCGTGGAAAATCGGAGAGCATTGGAGAAGATCGAATTCCGGTTTTGTTATCTGAAGGGGATGCTTGTGGTGAAATACTTCTTAGATGGTATCTTGAACAATTTTCCGAAAGCAAAGAAGGTAAAAAAGTAAAGCTTCAAGGAAAGGGGTTGACTAGTGACAGAACGGTAAAATGCTTAACCATTGTGGAGGCTTTTTCTCTTCGCGCTAAAGACATTGAAGAAGTCACAACTCTTTTTGCAAGATTCTTGCGGAACCCTCGTGTTCAAGGAGTCATAGTTATTCATTCATTCCATTTCCTTGCCGTCTTTGTCTTAATGCTTCATATCTTCACCCTTTTATGA 792 0.3927 MVMPKPIFCLVAIFVDPLFFFSIYVDKHVFSIVINWEVANILVLLRSITDVVYFLNILLKRRVRQAERYSWAATRGVPGKMVLENLPEDLVTDIRRHLFKFVKKVRIFFLMDEVEPILDPIRERLVQTTYSLRSKVLSQGGLVQKMVFIVRGKSESIGEDRIPVLLSEGDACGEILLRWYLEQFSESKEGKKVKLQGKGLTSDRTVKCLTIVEAFSLRAKDIEEVTTLFARFLRNPRVQGVIVIHSFHFLAVFVLMLHIFTLL* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2713 263 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 60 - -
Psa1g2713 263 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 59 249 - -
Psa1g2713 263 ProSiteProfiles cAMP/cGMP binding motif profile. 109 177 IPR000595 -
Psa1g2713 263 SUPERFAMILY cAMP-binding domain-like 55 229 IPR018490 -
Psa1g2713 263 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 7 60 - -
Psa1g2713 263 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 59 249 - -
Psa1g2713 263 Gene3D Jelly Rolls 105 231 IPR014710 -
Psa1g2713 263 Gene3D Helix hairpin bin 54 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2713 Psa-Chr1 234232103 234233818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2713 9 94 Ion Channels AT3G17700 38.889 5.00e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2713 K05391 - ccaj:109789004 246.899