Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2696 ATGAGTTTACCAAGCTTAGTTTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCTGAGATTTTAAATGTTGAGCATCCAACAACACTGAACCTCGGTCATAGATTAAACATCATTATCGATGTTGCGTCTGCATTACAATATCTTCATCAAGATTGTGAGCAAGTGGTCATTCATTCTGATCTAAAGCCAAGCAATGTCCTTCTAGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAGCCATTGGCGGTTCCTCTCATAAGAATACTAGTACAATTGGAATAAAAGGAACTGTTGGCTATACTCCTCCGGAGTACGGAATGGGTTCTGAAGTGTCCACACTCGGTGACATGTACAGCTTTGGAATCTTTCTGTTGGAAGTTCTAACTGGTAGAAGACCCATCGATGAAGCTTTTGAAAATGGTCAAAATCTGCATAATTTTGTAGCAGTGTCATTTCCTGATAATGTAATAAAGATTTTGGACCCACATCTTGTATTTAGAGATGGAGAAGTAGAAATAGAAGATGAAAATCATGAGAATCTTGCTCCCAATGTAGAGGAGGGTTTGGTTTCACTGTTTAGGATTGGACTTACTTGTTCATCTTGCTCCCAATGTAGAGGAGGGTTTGGTTTCACTGTTTAG 675 0.3896 MSLPSLVFDYMKNGSLEQWLHPEILNVEHPTTLNLGHRLNIIIDVASALQYLHQDCEQVVIHSDLKPSNVLLDDDMVAHVSDFGIARLVSAIGGSSHKNTSTIGIKGTVGYTPPEYGMGSEVSTLGDMYSFGIFLLEVLTGRRPIDEAFENGQNLHNFVAVSFPDNVIKILDPHLVFRDGEVEIEDENHENLAPNVEEGLVSLFRIGLTCSSCSQCRGGFGFTV* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2696 224 Pfam Protein kinase domain 6 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2696 224 ProSiteProfiles Protein kinase domain profile. 1 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2696 224 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 5 214 - -
Psa1g2696 224 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 5 214 - -
Psa1g2696 224 ProSitePatterns Serine/Threonine protein kinases active-site signature. 60 72 IPR008271 GO:0004672|GO:0006468
Psa1g2696 224 SUPERFAMILY Protein kinase-like (PK-like) 5 159 IPR011009 -
Psa1g2696 224 SMART serkin_6 2 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2696 224 Gene3D Transferase(Phosphotransferase) domain 1 11 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2696 Psa-Chr1 232138724 232139516 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2696 5 176 Receptor kinase-like Gene Family AT3G47580 50.282 3.01e-53 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Psa1g2696 Pkinase 6.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2696 - - mtr:MTR_5g025930 345.895