Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2669 ATGAATATGACTTGTGAGAGTCAGAACAAAGAGATGAGAGAAGAACAAGAAACATTGAAAGACGAAGAAGAAAGTTTCGCTTATGCTATACAACTTGCAATCTCTATTGCACTTCCCATGGCACTTCAATGTGCAATTGAGCTCGGTGTATTTGAAGTGTTGCAAAAAGCTGGTAAGGATAATTATCTCTCCGCCGACGATATTGTTTCTCGTCTTACCAACATTAACAATCCAAAAGCTTCTAAAATGTTAGATCGCATCCTTGCTCTTCTCGCCTCTCACTCGGTGCTTAATTGTCGCATCATTCCCCATGAAGAAAACCATTTTGATTCCTTTCAAAGACACTATAGCATCACTTGTGTTTCCAATTTCTTTGCTCCTAATTCTGATGGTGTTTCGCTAACACCCTTGATTGCGTTGAATAATGATAAAGTTATTCTTGCTAGTTGGTCTCAACTTAAAGATGCAATTCAGTTAGGAGGTACTGCATTCAATAAGGCTCATGGCACACATATATTTGACTATCCTAAATTGGACTCGAGGTTCAATCAAATTTTTAATACAGCGATGAAGAATCATTCAACTATAGTCATGAAGAGGGTTCTTGAATGCTACGATGATTTTGAGAACATAAAAAGACTTGTAGATGTTGGTGGTGGTCTTGGGATCAACATTAACCTGATCACTTCAAAATACAATCATGTGCAGGGTATCAATTTTGATCTGCCTCATGTCATACAACACGCTCCTTCTTATCCTGGAGTGGAGCACATCGGCGGAGATATGTTTGAATGTGTGCCCAAAGGAGATGCTATTTTTATGAAGTGGATACTTCATGACTGGAGCAATGAACGTTGTTTGAAACTTATGAAGAATTGTTATGATGCTATTCCCAATGATGGAAAGGTGATAGTTTTGGAGGCACTTCTACCTGTTATGCCTAAGAATGAAGTTGTTTGGAAATCCATCTCTCAAATGGATATTCTAATGATGACTCATTGCTTAGAAGGTAAAGAAAGAACCGAACATGAATTCAAAGATTTAGCAACTAAAGCTGGATTTCGTGGCATCAAATATAGATGTTGTATTTATAATTTTTGGGTTATGGAGTTTTTTAAGTAA 1122 0.3725 MNMTCESQNKEMREEQETLKDEEESFAYAIQLAISIALPMALQCAIELGVFEVLQKAGKDNYLSADDIVSRLTNINNPKASKMLDRILALLASHSVLNCRIIPHEENHFDSFQRHYSITCVSNFFAPNSDGVSLTPLIALNNDKVILASWSQLKDAIQLGGTAFNKAHGTHIFDYPKLDSRFNQIFNTAMKNHSTIVMKRVLECYDDFENIKRLVDVGGGLGININLITSKYNHVQGINFDLPHVIQHAPSYPGVEHIGGDMFECVPKGDAIFMKWILHDWSNERCLKLMKNCYDAIPNDGKVIVLEALLPVMPKNEVVWKSISQMDILMMTHCLEGKERTEHEFKDLATKAGFRGIKYRCCIYNFWVMEFFK* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2669 373 Coils Coil 2 25 - -
Psa1g2669 373 Gene3D - 5 125 IPR036388 -
Psa1g2669 373 SUPERFAMILY "Winged helix" DNA-binding domain 21 128 IPR036390 -
Psa1g2669 373 PANTHER O-METHYLTRANSFERASE 4 373 IPR016461 GO:0008168
Psa1g2669 373 Pfam Dimerisation domain 40 92 IPR012967 GO:0046983
Psa1g2669 373 Pfam O-methyltransferase domain 150 355 IPR001077 GO:0008171
Psa1g2669 373 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 4 373 - -
Psa1g2669 373 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 371 IPR029063 -
Psa1g2669 373 Gene3D Vaccinia Virus protein VP39 127 373 IPR029063 -
Psa1g2669 373 PIRSF O-mtase 6 373 IPR016461 GO:0008168
Psa1g2669 373 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 373 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2669 Psa-Chr1 230885428 230887161 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2669 22 373 Monolignol Biosynthesis Gene Families AT5G54160 49.432 2.44e-124 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2669 K13066 - gmx:100803633 480.715