Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2662 ATGTTTTATGAAGTTTTATCTAACATCATGAGCTTGATCATTGACTTAACCATATTATATATGGTTTTGTTTTTTCTATCATTGAACATAGTTTTGTGTATTGATATTGAAATCAATGATTTTTATCCACAAGAAAGATATGCTTTGTTACTCATAAGAGATTCATTAAATTCTTCTGTGGACTTGCATGGAAATTGGACAGGACCACCTTGTATAAACAATATTAGTAGATGGTTTGGTATCACTTGTTCGAATTGGCATGTTGTTCATATTACAATTCATGGTGTTAATCTTAGTGGCTATTTACCTTCAACATTCCTTCAAAACATAACTTTCTTGAGGCGAATTGATTTCAGAAACAATGCACTTTTCGGACTATTGCCGAATCTCACAGGTTTGGTTTTCTTAGAAGAAGTGAAGCTTTCTTTTAATCATTTATCGGGTTCAATTCCTTTGGAATATGTTGAGTTGCTTGGTCTTGAAGTTTTGGAGCTGCAAGAGAATTACTTAGATGGTGAAATTCCACCTTTTGATCAACCATCATTGAGAAGTTTTAACGTTTCATACAATCATTTGGTAGGGAAAATTCCTGAAACTTCTTTGCTTCAAAGGCTTCCAAAAAGTGCTTTTGATGATAATTCCGAACTTTGTGGAAAGCCATTGGATATGTCATGTCCTCCTTCAATGGAGAAAAATAAGAAAAAACTTCAAGTTTGGATTATTGCTTTGATTGTTTTTGGAGCTGCTTTGTTTCTTTTTCTGATGATTATTGCTTTCTTGGTTTGCAAAAGAAAATCTAGAGGAAATGAATCAAGAAGAAATGATTCAACAAGGTATGTTTTTGGAGCATGGGCATCTAATGTAGGGAACAGTGAAGATTCTGGAAGATTAGGCCAATTAGAATTTTTTGACAAGAAACTTCAAGTTTTCGACATGGATGATTTGTTAAGAGCATCAGCAGAGGTTGTAGGAAGAGGAGAATTTGGTGTTACATATAAAGCAACACTTGAAACTGGTAATGCTGTTGCAGTGAAGAGACTTAGTTACATGAATGAATTGAGCAAGAAGGAATTTATTCAGCAGATGCAATTGCTAGGACAGATAAAGCATGAAAATGTAGTTGAAATTATCTCCTTTTATCATTCAGAAGATCAAAAGCTTATCATATATGAACTTGTCTCTGATTGCACTTTGTTTGAACTCCTACATGAGGGAAGAGGAATTGGAAGAATACCACTTGATTGGAGCACAAGGCTTTCAATTATCAAAGACATAGCAAAAGGACTTGATTTCCTTCATCAATTTTTATCTTCACACAAAGTTCCTCATGCAAATCTCAAATCATCAAATGTTCTAATCCATCAAACCAACCAAGGTTACCATTCCAAGCTCACAGACTATGGTTTCTTGTCATTACTCTCATCATCCAACAAAAATGCAGAAAAGCTATCAATAAGCAAGTCACCGGAATTCGTTAAAAGGAAAAAGCTTACACACAAAACTGATGTATATTGTTTTGGCATCATTATGTTAGAGATTATAACTGGTAAAATTCCCGGAGGTGGCGAAGTTGACGAAACAACGAGTAATGATCTTTCGGATTGGGTTAGAACTGTGGTGAACAATGATTGGTCTACTGATATATTGGATTTGGAAATACTGTCTGAAAGAGAAGGACATGATGCAATGTTGAATCTTACTGAGATAGCTTTAGAGTGTACTGATTTGATGCCTGAGAAAAGGCCTAAAATGAGTGTAGTGTTGAAGAGAATTGAAGAGATGGAACAAATGATAAAAGAGAATGATTGA 1809 0.3444 MFYEVLSNIMSLIIDLTILYMVLFFLSLNIVLCIDIEINDFYPQERYALLLIRDSLNSSVDLHGNWTGPPCINNISRWFGITCSNWHVVHITIHGVNLSGYLPSTFLQNITFLRRIDFRNNALFGLLPNLTGLVFLEEVKLSFNHLSGSIPLEYVELLGLEVLELQENYLDGEIPPFDQPSLRSFNVSYNHLVGKIPETSLLQRLPKSAFDDNSELCGKPLDMSCPPSMEKNKKKLQVWIIALIVFGAALFLFLMIIAFLVCKRKSRGNESRRNDSTRYVFGAWASNVGNSEDSGRLGQLEFFDKKLQVFDMDDLLRASAEVVGRGEFGVTYKATLETGNAVAVKRLSYMNELSKKEFIQQMQLLGQIKHENVVEIISFYHSEDQKLIIYELVSDCTLFELLHEGRGIGRIPLDWSTRLSIIKDIAKGLDFLHQFLSSHKVPHANLKSSNVLIHQTNQGYHSKLTDYGFLSLLSSSNKNAEKLSISKSPEFVKRKKLTHKTDVYCFGIIMLEIITGKIPGGGEVDETTSNDLSDWVRTVVNNDWSTDILDLEILSEREGHDAMLNLTEIALECTDLMPEKRPKMSVVLKRIEEMEQMIKEND* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2662 602 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Psa1g2662 602 SUPERFAMILY Protein kinase-like (PK-like) 321 592 IPR011009 -
Psa1g2662 602 Pfam Leucine rich repeat N-terminal domain 44 84 IPR013210 -
Psa1g2662 602 Pfam Protein kinase domain 321 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2662 602 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 20 596 - -
Psa1g2662 602 ProSiteProfiles Protein kinase domain profile. 317 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2662 602 Gene3D Phosphorylase Kinase; domain 1 284 392 - -
Psa1g2662 602 PANTHER POLLEN RECEPTOR-LIKE KINASE 4 20 596 - -
Psa1g2662 602 Gene3D Transferase(Phosphotransferase) domain 1 394 602 - -
Psa1g2662 602 Gene3D Ribonuclease Inhibitor 42 227 IPR032675 -
Psa1g2662 602 SUPERFAMILY L domain-like 42 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2662 Psa-Chr1 230641326 230644142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2662 45 594 Receptor kinase-like Gene Family AT1G48480 34.189 2.72e-99 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Psa1g2662 Pkinase 9.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2662 - - gmx:102668068 850.892