Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2648 ATGGCGATAATTGAACTATATCCCAAATTCTTCTTCTCCCAAAACCCAATTCCCAAACCCTTCATAAGCCCTAATTTCAATCCCAAAAACACCTTATCCCATCAAATCCTCAAACCAATTGCTCAATTTTCTCACCAACCAATAACCACCACTCCAAACCGTGGCATAATCTTCCGGGAAAAAGTTCTATACCTCCTGAAACTCAAAGTAAACCCAGAAAAAGCCTTCAAACTAAACCCTACACTCCGAACTTGTCCTCTACGAACCCTAAAATCGGTTGAACAATGTCTTTCATCAATTGGCATACACAGAAGCGAAATGGGTCGAATCCTCGACATGCTTCCTTCACTTCTCACGTGCGAACCACACAACGACATTTACCCCCTTCTCGATTTTCTTCTCAACGAGGTTAACATTCCTTACCATGATGTTCAAAAATCAATCTTGCGGTGTCCTAGGTTGTTGGTGAGTTGCATAGAGACTCGATTAAGACCTGCACTTTATTTTTTGAGGGAATTAGGGTTTGTTGGGCCTCACTCTCTCACGTGCCAAACCACATTGCTTTTGGTTTCGAGTGTTGAGGATACCCTTTTGCCTAAAGTTGAGTTTTTGATGGGTTTGGGGTTCACACGTGTGGAGGTTTCGAATATGATTGTTAGGTCTCCTGGGTTGTTGACTCTTAGTGTAAATAACAATTTGATTCCTAAAGTTGATTTTTTCTTGAATGAGATGAATGGTGATGTTGCTGAGTTGAAGAGGTTTCCTCAGTATTTCAGTTTTAGCTTGGAAAAGAGGATTAAGCCGCGGCACGCAGAGCTAGTTCGGCTTGGATTGTCGCTTCCTCTGCAAGAGATGTTGCGGGTTAGTGATGGCGCGTTTGATTCTATGTTGTTTGA 896 0.4219 MAIIELYPKFFFSQNPIPKPFISPNFNPKNTLSHQILKPIAQFSHQPITTTPNRGIIFREKVLYLLKLKVNPEKAFKLNPTLRTCPLRTLKSVEQCLSSIGIHRSEMGRILDMLPSLLTCEPHNDIYPLLDFLLNEVNIPYHDVQKSILRCPRLLVSCIETRLRPALYFLRELGFVGPHSLTCQTTLLLVSSVEDTLLPKVEFLMGLGFTRVEVSNMIVRSPGLLTLSVNNNLIPKVDFFLNEMNGDVAELKRFPQYFSFSLEKRIKPRHAELVRLGLSLPLQEMLRVSDGAFDSMLF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2648 298 PANTHER CGI-12 PROTEIN-RELATED 40 297 IPR003690 GO:0003690|GO:0006355
Psa1g2648 298 Pfam mTERF 76 170 IPR003690 GO:0003690|GO:0006355
Psa1g2648 298 Pfam mTERF 134 293 IPR003690 GO:0003690|GO:0006355
Psa1g2648 298 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC 40 297 - -
Psa1g2648 298 Gene3D Transcription termination factor 3, mitochondrial 58 297 IPR038538 -
Psa1g2648 298 SMART mt_12 179 210 IPR003690 GO:0003690|GO:0006355
Psa1g2648 298 SMART mt_12 215 247 IPR003690 GO:0003690|GO:0006355
Psa1g2648 298 SMART mt_12 108 140 IPR003690 GO:0003690|GO:0006355
Psa1g2648 298 SMART mt_12 73 103 IPR003690 GO:0003690|GO:0006355
Psa1g2648 298 SMART mt_12 248 279 IPR003690 GO:0003690|GO:0006355
Psa1g2648 298 SMART mt_12 145 176 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2648 Psa-Chr1 229121025 229122043 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa1g2648 mTERF 5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2648 K15032 - gmx:100785219 373.629