Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2640 ATGGAAATTGAACCTAGTTACAAACCTACATCACTAGGAAACGAACCATCTTCAAATATACCATCTTTGAGTCCATTGAGTGAAACCCTTTGGAGAGAAAAGGCGAAAACCGAGTTCATCGGCGACGTTTCGGCAAGACTAACATGGAAAGATTTAACTGTTATGGTAACCCTAAGCAATGGTGAAACACAAAATGTGTTAGAGAATTTAACAGGCTATGCTGAACCAGGTTGTTTTACTGCTCTTATGGGACCTTCTGGTTCTGGAAAATCAACTCTTCTAGATGCACTTTCTAGTCGTTTAGCTTCTAATGCTTTTCTTTCTGGTACTATTCTTCTTAATGGTCGCAAAGAAAAGCTATCTTTTGGAACTGCTGCTTATGTGACACAAGATGATAACTTGATTGGAACCTTAACAGTGAGAGAAACAATATGGTATTCAGCTAGATTAAGATTACCAGATAAAATGTCAAGATCAGATAAAAGAGCATTAGTTGAGAGCACAATAGTTGCAATGGGACTTCAAGATTGTGCAGACACAGTTGTTGGTAATTGGCATTTAAGAGGAATAAGTGGTGGTGAAAAGAGAAGAGTTAGTATTGCTTTGGAAATATTAATGAGACCTAGATTGCTTTTCCTTGATGAACCAACCAGTGGACTGGACAGTGCTTCAGCTTTCTTTGTGACTCAAACACTACGTGCATTAGCAAGAGATGGAAGAACAGTGATAGCTTCAATTCATCAACCTAGCAGTGAAGTGTTTGAATTGTTTGATCAATTGTATTTGCTTTCTGGTGGCAAAACTGTTTATTTTGGCCAAGCTTCTGATGCATATGAGTTCTTTGAACAAGCTGGATTTCCATGCCCTGCTCTGAGGAACCCTTCTGATCATTTTCTAAGATGCATCAATTCTGACTTTGATAAAGTCAAAGCCACTCTTAAAGGGTCCATGAAATTGAGGTTTGAAGGAAGTGATGACCCTCTAGACAAGATCACAACTGCTGAAGCTATCAGAACTCTTATCGATTTCTACCGCACTTCTCAGCACGCTTACACCGCAAGGCAAAGAGTCGATGAAATTTCCAAAGTTCGAGGGACGGTGCTTGAAGCCGGAGGAAGTGAAGCTAGCTTCTTGTTGCAGACATACATATTAACCAAACGATCGTTCATTAACATGTCGAGGGACTTTGGTTACTATTGGCTTCGACTCGTAATCTACATTGTGGTCACTATCTGCATCGGAACAATTTACTTGAATGTTGGCACCGGCTACAACTCGATTCTGGCTAGAGGTTCATGTGCATCTTTTGTCTTCGGTTTCGTCACCTTCATGTCGATCGGTGGATTTCCTTCATTTGTCGAAGATATGAAGGTTTTTCAAAGGGAGAGGCTTAATGGACATTATGGTGTGACTGCATTTGTTGTAAGCAATACATTATCTGCTACACCATTTCTGGTATTAATCACTTTCCTGTCCGGAACAATTTGTTACTTCATGGTTCAACTGCATCCCGGATTTTCGCATTACGTTTTCTTCGTGCTGTGTCTTTATGCGAGTGTCACGGTTGTCGAAAGCTTGATGATGGCAATTGCTAGTATTGTTCCTAACTTTCTCATGGGAATCATCATTGGAGCAGGAATTCAGGGCATATTCATGTTGGTCTCTGGCTACTTCAGGCTTCCACATGATATCCCAAAGCCGGTTTGGCGCTATCCAATGTCATACATCAGTTTCCATTTTTGGGCATTACAGGGTCAATACCAGAACGATTTGAACGGTTTAATATTCGACAACCAAACACCGGATCTTCCAAAGATACCTGGCGAATACATCTTGGAGTACGTGTTCCAGATCGACGTGAAAAGATCAAAATGGATCGATTTAAGCGTGATCTTAAGCATGATCATCATATACCGCATTATTTTCTTCATCATGATCAAGATCAATGAAGATGTTACTCCTTGGGTTAGAGGGTATCTTGCTAGGAGAAGAATGCAACAAAAAAGTGGAGCACAGAATACAACTATTGCACCAGATGTTCTCACTCAATCTCCATCTTTGAGAACTTATATTTCTAATCAAAAGTAG 2088 0.4018 MEIEPSYKPTSLGNEPSSNIPSLSPLSETLWREKAKTEFIGDVSARLTWKDLTVMVTLSNGETQNVLENLTGYAEPGCFTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGRKEKLSFGTAAYVTQDDNLIGTLTVRETIWYSARLRLPDKMSRSDKRALVESTIVAMGLQDCADTVVGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASDAYEFFEQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDKITTAEAIRTLIDFYRTSQHAYTARQRVDEISKVRGTVLEAGGSEASFLLQTYILTKRSFINMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVVSNTLSATPFLVLITFLSGTICYFMVQLHPGFSHYVFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLNGLIFDNQTPDLPKIPGEYILEYVFQIDVKRSKWIDLSVILSMIIIYRIIFFIMIKINEDVTPWVRGYLARRRMQQKSGAQNTTIAPDVLTQSPSLRTYISNQK* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2640 695 ProSitePatterns ABC transporters family signature. 190 204 IPR017871 GO:0005524
Psa1g2640 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 286 IPR027417 -
Psa1g2640 695 SMART AAA_5 76 247 IPR003593 -
Psa1g2640 695 MobiDBLite consensus disorder prediction 1 21 - -
Psa1g2640 695 CDD ABCG_EPDR 44 272 - -
Psa1g2640 695 Pfam ABC-2 type transporter 247 303 IPR043926 GO:0140359
Psa1g2640 695 Pfam ABC transporter 67 218 IPR003439 GO:0005524
Psa1g2640 695 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 20 692 - -
Psa1g2640 695 Pfam ABC-2 type transporter 380 586 IPR013525 GO:0016020|GO:0140359
Psa1g2640 695 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 47 290 IPR003439 GO:0005524
Psa1g2640 695 Gene3D - 41 285 IPR027417 -
Psa1g2640 695 PANTHER OS04G0528300 PROTEIN 20 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2640 Psa-Chr1 227571773 227578851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2640 65 251 Calmodulin-binding Proteins AT2G36910 33.333 6.04e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2640 K05681 - gmx:100816389 1242.25