Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2612 ATGTTGAACATCTCTTCAAATTCACACACCATTTCCTCAAAAGCTTCCTACGGGGAGGTCCGGTTAGCGTCGAGTTGCCCGAAGAAGCGGGCAGGGAGGAAGATATTCAAGGAAACCCGCCACCCGGTGTATAGAGGTGTGAGGAAGAGGAATTTAGATAAGTGGGTTTGTGAAATGAGAGAGCCCAACAAGAAGACTAGAATTTGGCTAGGGACTTTTCCAACCGCCGAGATGGCCGCCCGAGCCCACGATGTTGCAGCAATGGCATTGAGAGGCCGCTACGCCTGTCTCAATTTCGCAGACTCCGTGTGGCGACTCCCTATTCCGGCAACCTCGGATACAAAAGATATACAAAAAGCGGCGACAGAAGCCGCCGAGGCTTTCAGACCAGACAAGATTGTAATGACTAAGGACATTGATACAGTTGTAGCAATCGTCGCCACAGAGAAGCTGAGTATGTTTTGTATGGAAGTGGAAGAAGAGGAGGAAGGGTTGAATATGCCAGAGTTATGGAGGAATATGGCTCTAATGTCCCCTACACATAGTTTTGAGTATCATGATGAGTATGAACATATTGATGTACAAGACTATCGAGATGAAGAGATATCACTATGGAGCTTTTAA 624 0.4712 MLNISSNSHTISSKASYGEVRLASSCPKKRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPIPATSDTKDIQKAATEAAEAFRPDKIVMTKDIDTVVAIVATEKLSMFCMEVEEEEEGLNMPELWRNMALMSPTHSFEYHDEYEHIDVQDYRDEEISLWSF* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2612 207 SUPERFAMILY DNA-binding domain 43 102 IPR016177 GO:0003677
Psa1g2612 207 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Psa1g2612 207 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
Psa1g2612 207 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Psa1g2612 207 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Psa1g2612 207 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Psa1g2612 207 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 206 IPR045277 GO:0003700
Psa1g2612 207 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Psa1g2612 207 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Psa1g2612 207 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 12 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2612 Psa-Chr1 223789228 223790390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2612 11 207 AP2-EREBP Transcription Factor Family AT4G25470 54.589 7.17e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa1g2612 AP2 6.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2612 - K09286 mtr:MTR_6g465460 310.842