Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2597 ATGATTGCCAACAACAAAGCACTTGAATGGAAGAGTAGTCAGGAAATTATAAACGAAAGTGATGAACTTAACAAGCAGTTAGTGGTCTCAAAGGCTGATTGGAAACCCCAGGACTTGGCACTGAATCAAGTTGCATACGACGATTCAACCATGCCAGCACTAGTGTGCTCTTGTACTGGCGTTCTCAGACAATGCTACAAATGGGGTAATGGAGGTTGGTAA 222 0.4324 MIANNKALEWKSSQEIINESDELNKQLVVSKADWKPQDLALNQVAYDDSTMPALVCSCTGVLRQCYKWGNGGW* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2597 73 Pfam GAGA binding protein-like family 13 73 IPR010409 -
Psa1g2597 73 PANTHER - 11 73 IPR010409 -
Psa1g2597 73 PANTHER PROTEIN BASIC PENTACYSTEINE6 11 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2597 Psa-Chr1 222075292 222075513 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2597 5 73 BBR or BPC Transcription factor family AT5G42520 57.143 1.41e-22 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Psa1g2597 GAGA_bind 4.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2597 - - mtr:MTR_1g023660 141.354