Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2562 ATGAACTACTACTTGTTTAGCTGCCCTTTTGTTGATTCTATTGCTGGTGGTCCTATTTATAACATACCAAAAGGAAGAAAAGATGGAACAAGGTCTAAAATTGAGGATACTTTCAATCTGCCACCTCCATTTTTCAATGCATCTCAGCTCATTAGGATGTTTGGCCAACATGGTTTTTCTCCAAAAGATATGGTGGCTCTTTCTGGAGCTCACACACTAGGAGCAGCAAGGTGTATTTCTTTCAAAGAAAGACTAACCCAATTGGATCAAACATTGGATTCAGAATTTGCAAAAACACTCTCCAAAACATGCAATGTTGGTGACAATGCTGAGCAACCTTTTGATGCAACTAGAAACGATTTTGATAACTCATACTTCAATTCTTTGGTCTCAAACAATGGTGTTCTTACTTCGGACCAAACATTGTACAATAGCCCACAAACTAGGAACATTGTGAACATGTATGCAATGAATGAGGCACTGTTCTTCTTGGATTTTCAACAGGCTATGGTGAAGATGAGCTTGCTTGATGTTAAAGAAGGTTCTAAAGGGGAAGTAAGAAAAAATTGCCATAGAATAAATTAA 585 0.3744 MNYYLFSCPFVDSIAGGPIYNIPKGRKDGTRSKIEDTFNLPPPFFNASQLIRMFGQHGFSPKDMVALSGAHTLGAARCISFKERLTQLDQTLDSEFAKTLSKTCNVGDNAEQPFDATRNDFDNSYFNSLVSNNGVLTSDQTLYNSPQTRNIVNMYAMNEALFFLDFQQAMVKMSLLDVKEGSKGEVRKNCHRIN* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2562 194 Pfam Peroxidase 14 157 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g2562 194 ProSitePatterns Peroxidases proximal heme-ligand signature. 63 73 IPR019793 -
Psa1g2562 194 PANTHER PEROXIDASE 25-RELATED 14 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g2562 194 PANTHER PEROXIDASE 47 14 192 - -
Psa1g2562 194 SUPERFAMILY Heme-dependent peroxidases 13 194 IPR010255 GO:0004601|GO:0006979|GO:0020037
Psa1g2562 194 Gene3D - 14 194 - -
Psa1g2562 194 PRINTS Plant peroxidase signature 16 31 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g2562 194 PRINTS Plant peroxidase signature 62 74 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g2562 194 PRINTS Plant peroxidase signature 112 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g2562 194 PRINTS Plant peroxidase signature 128 145 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g2562 194 PRINTS Plant peroxidase signature 168 181 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g2562 194 ProSiteProfiles Plant heme peroxidase family profile. 14 194 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g2562 194 PRINTS Haem peroxidase superfamily signature 16 28 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g2562 194 PRINTS Haem peroxidase superfamily signature 63 78 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g2562 194 PRINTS Haem peroxidase superfamily signature 114 129 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g2562 194 Gene3D Peroxidase, domain 2 41 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2562 Psa-Chr1 218399177 218400931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2562 15 194 Peroxidase AT4G33420 73.889 1.44e-93 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2562 K00430 - gmx:100809245 323.168