Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2558 ATGGTCGTTACCGGCGAAAAGCCGTTGAAACGGATGAAGAAGACATTAAACGCCGATTTCCAAAACTTTCCACCGTCGGAAGGCAACTTCTGCGGCGCATCCTTCCGGACGAATGTACGTTCCTTCCTGACGAACCACGCGCAACTCCCCCCACCATCGGCATTGTTTCCTCACTTACTGACGTGGCAGATCATGTTCCGGATCGGTGGGGACTTGACTGCGACGGAGGATGGATCGGATCCGGTGGTTTGTCTTGATGTTGTTGAAGAGGATGTTGCTAGATCCAGATCTGTGTTCTGCGATCTGACGGAGGATGGATCGGATCCGGTGGTTTGTCTTGATGTTGTTGAAGAGGATGTTGCTAGATCCAGATCTGTGTTCTGCGATCAGTGCCGAGTTGTTGGTTGGAGTGGACACCCGGTGTGCGGGAAACGGTACCATTTTATCATAAAGGCTGATGGGAGCTCTATTGGTGGGTATCACAAGCCATGCATGTGCTGTGGAGATATCTTGCATTTGTCAGAATCCAAGTGCAAGTCTTGCAACCATGTGACAAGCACAGATGATGTTGAAGATTGGGTGTACCAACAATTGGAGAGCACTACTCATCTTTTACACGGTGTGGTTCATGCCAATGGTTATGGGCACCTTCTTCGTGTTAATGGCAGAGAAGGAGGCTCTAGATTTCTTTCTGGCTCCCATATCATGGACTTCTGGGATCGGCTCTGCAAGACACTTGGAGTCAGAAAAGTTAGTGTGATGGATGTTTCAAAGAAATATGGACTCGAGTACCGTCTGATCCATTCCATCACAAGGGGACATCCCTGGTATGGCGAATGGGGCTATCAATTTGGCTCTGGTAGCTATGGTCTCACACAGGAAGCATATAGGACTGCTGTGGAAAGCGTTTCCGACTTGCCTTTGTCGATATTCCTCTCTCAGGGCCAGAAGCCCCACTCTTGTATGCAGGGAATCATCTCACACTATCAGTCTTTGTCGGAACATCAGCTTGTAAATATAAGAGACCTCTTCTGTCTTTTGATGGGTTTTATTCGTGATTCTATCAAGACTTCATTAACGGTTGACAGCATCACTGGCAAGAAACGCTGCTTTAATGCCACAGGAGTTTCATGTTCCTGGGGGGAGAGTGACACGGTACGTGTTGAGGAAGCTATTCTCAGAGTGCTGCGTGCTGTGTCTCGGTCCAATTGGGTGAGCTGGCGTGCTCTTAGGGGTTCTGTCTATAAGGTGGCCTCTGCTGAACTGCTTGATTACTGCCTTGGAGAACTGGGTGGAAAAGTGGTCTTGGGTTCAATGGTTGTAAATACCCGGTGCAATCCCGAGACTGGAGCTTTTGAGTGCAGACTTGAGGCTGCAAACACTTCTTGCGACGGAAAGACATCAAACAATTATTCTTCAGGCTCAAAGTGTCCATCTAAAGAAAACCTTCTATATGACTTGAGATATTTGTATGGATATTTGCTTAACTCTCAGATGATGCAGAGCTATTTTCCCAAGGAAACAAGGGCTCCTGTAATGAGCTCAGTCCAGAAACTTCTTAACTGTAAGCAGTTAGTAAAAGATTATAGCCCTGATATGTTGCCAACGGCCGATTTGTATAAAATACGCCTCTCATGTCAAGTGGAACTCGCGGACGAATCTGAAAACCCCACAATTCCACCAGAACTTGTTATCCTACCCATAAATGCAACAGTATCTGACCTTAAAATCGAAGCAGCAAATGTTTTTCAAGATGTATATCTCATGTTCAGAAGATCTGTAGTCGATGAGCTAGTTGGCTATTGCAGTCTAGATGATTCCACTCAGGTCAAGCTCTTGCTAGGATCAACAGAAACGGTTTGTGTCCGGGGAAGATGCATTGGGAAGAATGGATTGAGCAAGTACCGAATGGAACGTGGAATTGAGAGGTGGACTGTAGAATGCAGCTGTGGTGCCAAGGATGATGATGGGGAGAGAATGTTGGCTTGTGATAAATGTGGAGTGTGGCGGCATACTATATGTTCCGACATTCATGATACACAACCTGTTCCTACCCATTTCATTTGTCTAAAATGCCAAAACTCTGACTTGAAACCTAAATCAATTGTGAATTGCAAAGATGAAACTCTGATTAACATTACCGGTAGTAGTAGCAGTTGCTTTGGAAAGGGATTGCCAGTTCCATCTGATGTTCATTGA 2199 0.4602 MVVTGEKPLKRMKKTLNADFQNFPPSEGNFCGASFRTNVRSFLTNHAQLPPPSALFPHLLTWQIMFRIGGDLTATEDGSDPVVCLDVVEEDVARSRSVFCDLTEDGSDPVVCLDVVEEDVARSRSVFCDQCRVVGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTSTDDVEDWVYQQLESTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGSHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLIHSITRGHPWYGEWGYQFGSGSYGLTQEAYRTAVESVSDLPLSIFLSQGQKPHSCMQGIISHYQSLSEHQLVNIRDLFCLLMGFIRDSIKTSLTVDSITGKKRCFNATGVSCSWGESDTVRVEEAILRVLRAVSRSNWVSWRALRGSVYKVASAELLDYCLGELGGKVVLGSMVVNTRCNPETGAFECRLEAANTSCDGKTSNNYSSGSKCPSKENLLYDLRYLYGYLLNSQMMQSYFPKETRAPVMSSVQKLLNCKQLVKDYSPDMLPTADLYKIRLSCQVELADESENPTIPPELVILPINATVSDLKIEAANVFQDVYLMFRRSVVDELVGYCSLDDSTQVKLLLGSTETVCVRGRCIGKNGLSKYRMERGIERWTVECSCGAKDDDGERMLACDKCGVWRHTICSDIHDTQPVPTHFICLKCQNSDLKPKSIVNCKDETLINITGSSSSCFGKGLPVPSDVH* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2558 732 SUPERFAMILY FYVE/PHD zinc finger 634 696 IPR011011 -
Psa1g2558 732 ProSitePatterns Uncharacterized protein family UPF0054 signature. 206 216 IPR020549 -
Psa1g2558 732 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 106 700 - -
Psa1g2558 732 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 101 - -
Psa1g2558 732 SMART PHD_3 647 693 IPR001965 -
Psa1g2558 732 PANTHER OS01G0877500 PROTEIN 106 700 - -
Psa1g2558 732 PANTHER OS01G0877500 PROTEIN 1 101 - -
Psa1g2558 732 CDD PHD_MMD1_like 647 692 - -
Psa1g2558 732 Pfam PHD-finger 648 694 IPR019787 -
Psa1g2558 732 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 698 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2558 Psa-Chr1 217753686 217757666 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2558 111 703 PHD Transcription Factor Family AT5G22260 29.531 7.44e-79 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa1g2558 PHD 5.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2558 - - gmx:100818189 1025.39