Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2555 ATGCCCGTAATGAAAAAGAATTCTGAGCATAATCGTTTTGAAGCTGTATTCAACAAGCTGCTGAGCCAGATTGGGGAACCTGTTGACTTTGAACTTCCAGATTGGATTAAGATAAGGACAACACAGTACACCCATATAAAGCGCAATATATATGTCACTAAGAAGAACAAGAGAAAGTTTGATGATGGCATATTCTGCTCCTGCGAATCTTCACCTGACTCTACTAGTTTATGTGGTAGAGATTGTCAATGCGGGATGCTTCTGTCATGCTGTTCTTCAGGCTGCAAATGTGGGGTCTCGTGTCTCAACAAAGCTTTTCAGCATCGCCCTGTGAAAAAGCTGAAACTGGTTAAGACTGAGAAATGTGGCTCCGGAGTTGTGGCGGATGAAGATATCAAGCTTGGGGAGTTTGTCATCGAATATGTTGGAGAAGTCATCGATGATAAAACATGCGAACAGAGGCTTTGGAATATGAAAGATCGCGGGGAAACAAACTTTTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCAACATATAAGGGAAACAAATCACGATATATCAATCATAGTTGCTGCCCGAATACTGAGATGCAGAAATGGATAATAGAGGGTGAAACAAGAATCGGTATATTTGCAGCTCGTGACATAGAGAAGGGCGAGCATCTGACTTATGACTACCAGTTTGTTCAATTTGGTGCAGACCAAGATTGCCACTGTGGAGCTATACAGTGTAGGCGTAAGCTAGGTGCACGGCCTACCAAGCCTAAAATGTCTTCAGATGCTGCATTAAAATTAGTTGCATATCAGGTTTGTCAGAATGGAGGCTTGCAAATTGGTCAAATTGGAAGTTCCCGGGTGGTTGAGCAATCAAAATGCTTACACAATTGTGTCGATGAAGTCATCATGATTAAACAACTTGGAAATGTCAGATTTGGGATTATTAAATGGTTTGATGAATATACCCGCAAACATAAGATCATGTTTGAGGATGGTTGTGTTGAAATTCATGACATGTCAAAAGAAAATTGGGAACTAGTGAGATTGTGA 1053 0.4065 MPVMKKNSEHNRFEAVFNKLLSQIGEPVDFELPDWIKIRTTQYTHIKRNIYVTKKNKRKFDDGIFCSCESSPDSTSLCGRDCQCGMLLSCCSSGCKCGVSCLNKAFQHRPVKKLKLVKTEKCGSGVVADEDIKLGEFVIEYVGEVIDDKTCEQRLWNMKDRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIEGETRIGIFAARDIEKGEHLTYDYQFVQFGADQDCHCGAIQCRRKLGARPTKPKMSSDAALKLVAYQVCQNGGLQIGQIGSSRVVEQSKCLHNCVDEVIMIKQLGNVRFGIIKWFDEYTRKHKIMFEDGCVEIHDMSKENWELVRL* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2555 350 SMART shorttest3 61 111 IPR006560 GO:0005634|GO:0018024
Psa1g2555 350 Pfam SET domain 123 228 IPR001214 GO:0005515
Psa1g2555 350 ProSiteProfiles AWS domain profile. 61 110 IPR006560 GO:0005634|GO:0018024
Psa1g2555 350 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 37 293 IPR025787 -
Psa1g2555 350 Gene3D SET domain 30 267 IPR046341 -
Psa1g2555 350 SMART PostSET_3 235 251 IPR003616 -
Psa1g2555 350 SMART set_7 112 235 IPR001214 GO:0005515
Psa1g2555 350 CDD SET_ASHR3-like 113 251 - -
Psa1g2555 350 ProSiteProfiles Post-SET domain profile. 235 251 IPR003616 -
Psa1g2555 350 PANTHER SET DOMAIN PROTEINS 5 348 - -
Psa1g2555 350 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3 5 348 - -
Psa1g2555 350 ProSiteProfiles SET domain profile. 112 229 IPR001214 GO:0005515
Psa1g2555 350 SUPERFAMILY SET domain 37 241 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2555 Psa-Chr1 217666988 217673500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2555 91 247 C2H2 Transcription Factor Family AT2G23740 36.158 3.77e-23 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa1g2555 SET 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2555 - - gmx:100808183 581.252