Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2494 ATGTTGAATTGCGTTGTTGAGTTGTTATTGGGTGGTTTGAGTTTCGCTTGGATGAGGTTCTGGGTTGCGAAGATATGGTCGACGTACGGAAACGAATATGAGGTTGAACACTATGGTGCACCATTGCGTCTCGCGGCGGGTTATGGTGAAGAAGACGGTGAAGGAAATGTGAGGCGAAAGAGGGTGAATGGGTTCGCCGACGATTCAATCAGCGGTTTGACGGTGGCGAACGGAGAATTTCAGCATATTCCGCGTGTGCTGAACACCAACGTCGATGGGAAACAGAAGATAATGTTCGCAATGACCTCCATCAAGGGTATTGGAAGACGATTTTCCAACATTTGCTGTAAGAAGATTGATATTGACATGAACAAGAGGGCTGGTGAGTTGAGTGCTGCAGAGTTGGATAATTTGATGAGTGGTCTTGTCAGGATTTGGTGTGGGTGA 447 0.4698 MLNCVVELLLGGLSFAWMRFWVAKIWSTYGNEYEVEHYGAPLRLAAGYGEEDGEGNVRRKRVNGFADDSISGLTVANGEFQHIPRVLNTNVDGKQKIMFAMTSIKGIGRRFSNICCKKIDIDMNKRAGELSAAELDNLMSGLVRIWCG* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2494 148 PANTHER 40S RIBOSOMAL PROTEIN S18-RELATED 75 139 - -
Psa1g2494 148 SUPERFAMILY S13-like H2TH domain 85 140 IPR010979 GO:0003676
Psa1g2494 148 ProSiteProfiles Ribosomal protein S13 family profile. 86 140 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Psa1g2494 148 Pfam Ribosomal protein S13/S18 85 140 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Psa1g2494 148 Gene3D - 71 144 - -
Psa1g2494 148 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 75 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2494 Psa-Chr1 209984531 209985497 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2494 75 140 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 84.848 1.85e-35 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2494 K02964 - bvg:104905392 120.168