Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2471 ATGTGCAGGGGGGATGTACCCTCCCAGCTCTGTCAGGAATGCATAGTTAATGCAACCCAAACACTATCCTCTGACTCAGAGTGCTCTTTGTCTGAACGAGCGGTGATTTGGTACGACGAATGCATGGTTAGATACTCCAGCAATTCTTTCTTTTCCACTGTCGGAACAAGTCCTAATGTTATGTTGTTTAACACTGCGAATGTCTCCAACACGTCAAACTTCATGCCTTTATTGGCTTCAAGCATGACAGAAACTGCAGATGAAGCAGCACGTCCACTTACTGGGGACAAGAACAAGATGTTTGCCACAACTGAAAATCCGATTGCAAATTTTCAAACACTTTACTGTCTAGCTCAGTGCACGCCAGACTTGTCGCTCAATGATTGCAGAACATGTCTCAGTGATGCTATTGAACTTCTTCCGCAGTGTTGTGATGGAAAGCAGGGCGGGAGAATTTTATTTCCTAGCTGTAATATTAGGTACGAACTATATCCTTTTTATAGCTCAACTAATGCTCTATCACCAAATGCAACTGTTCCAGAAACAAATGATTCGAAACAAGATGCAGGTTTTTCACAAGATCCATTTTATCTTGACTATAATTGCTCAAGTAACAAGAGTACAATCACTGAGAAAAAGTTCAAATTACTTCTATCATATTTGTCTTCCAATGCCACAAGCGGCAAAACATTTTATAGAACCAAAGTGGAAGATATGGTGTACGGCCTATTCATGTGTCGAGGTGACCTTCCCGCTCGCCTCTGTAATCAATGCGTGAAAAACGCAACGGATCGAATATACTCCAACTGTCTTTCATCATCAGAGGGTATAATTTGGTACAGCCACTGCTTGCTTCGCTATTCTTTTCGTAATTTCTTCTCTGACATGGAAACTAGTCCTAAGTATAGCCATCTTAATATCACCACATATTCCATCTCTGACCAAAACTTGTTCACTAGTAAATTGTCAAATCAGTTATCTCAACAAGCTAATGATACAGGAGACAGTGATGATAGATATACGACCAACAAATTAAAATTGAATGAATTACAAACCTTGTATACACTTGAACAATGTACTCGAGATTTGTCTAGTAGTCAATGCTCTTCATGTCTAAATGATGTAATCGGTACATCAATTCCATGGTCAAATTTGGGAAGTATTGGGGGAAGAATTCTATATCCTAGCTGCAATCTCAGATTTGAATTGTTCCAATTTTACAGCGAGGTTGGTGAAGCTCCACCGCCTGAAAATCCTCCATTAGAAAATAAAGATAATTATCCACCACTAAGGAGAATTGTCGCCATCGTTGTCCCTATCATTATTATGTTGATACTCTTTCCTATTGGTTACTTCTATTTTCTAAAGAGAAAGGGAAGAAAGAGTCGTAGAACTATTCTTCGAGAAAATTTTGGTGAAGAAAGTGCCACTTTAGAACCAATGCGATTCGAGTGGATGGTAATTGAAGCAGCAACTAACAACTTTTCTAAAGATAATTTCATTGGCAAAGGTGGATTTGGAGAGGTTTACAAGGGTATCCTTCTGGATGGGCGAGAAGTTGCTATAAAGAGACTTTCAATAAATTCCAAGCAAGGTGTTGAAGAGTTCAAAAATGAAGTTTTATTGATAGCTAAACTTCAACATAGAAATCTAGTAACATTTATTGGTTTTTGTCTTGAAGAACACGAGAAAATACTTATTTATGAATTTGTGTCCAACAAAAGTCTTGATTATTTCTTATTCGATTCTCAATGCAAAAAGTTGTTAACTTGGGTTGAACGCTTCAATATCATTGGAGGAATTGTTCGAGGAATTCTTTATATGCATGAGCATTCCCGACTCAAAGTCATACATCGCGATCTCAAACCAAGTAATATTCTATTAGATGAAAACATGATTCCTAAAATTTCTGATTTTGGTTTGGCTCGAATTGTTGAAATAAGTCAAGATGAAGGAACTACGAATAGAATTGTTGGAACATATGGTTATATGTCTCCGGAATATGCAATGTTTGGACAATTTTCTGAAAAGTCAGATATTTATAGTTTTGGAGTCATGCTTTTAGAGATTGTTGCTGGCAGAAAGAATATGAGTTCATATACACCACACCAGGGTGCTGAAGGGGTTAATGGGCTCTTGAATTATGTTTGGAGACAGTGGAAGGATCAAACACCGTTAAGTATATTGGATCCAAATATTGTAGAGGATTATTCGAAAGTTGAAGTAACTAAGTGCATTCAAATTGGTCTATTATGTGTTCAACATAACCCAGATGCTAGACCTTCAATGGTGACAGTTGCTTCATATCTTAGTAGTTATTCAATTGAATTACCAACTCCACAAGAACCTACATTTTTCTTACATCGTAGAACTAATTCAAAATCCCATGCACAAGAATCAAGTTCAACTCAATCTGCAAATAGTTCATCCCTATTCTCTATGAATGAAATGTCTATCACTAATTTTATTCCTAGATAG 2478 0.3717 MCRGDVPSQLCQECIVNATQTLSSDSECSLSERAVIWYDECMVRYSSNSFFSTVGTSPNVMLFNTANVSNTSNFMPLLASSMTETADEAARPLTGDKNKMFATTENPIANFQTLYCLAQCTPDLSLNDCRTCLSDAIELLPQCCDGKQGGRILFPSCNIRYELYPFYSSTNALSPNATVPETNDSKQDAGFSQDPFYLDYNCSSNKSTITEKKFKLLLSYLSSNATSGKTFYRTKVEDMVYGLFMCRGDLPARLCNQCVKNATDRIYSNCLSSSEGIIWYSHCLLRYSFRNFFSDMETSPKYSHLNITTYSISDQNLFTSKLSNQLSQQANDTGDSDDRYTTNKLKLNELQTLYTLEQCTRDLSSSQCSSCLNDVIGTSIPWSNLGSIGGRILYPSCNLRFELFQFYSEVGEAPPPENPPLENKDNYPPLRRIVAIVVPIIIMLILFPIGYFYFLKRKGRKSRRTILRENFGEESATLEPMRFEWMVIEAATNNFSKDNFIGKGGFGEVYKGILLDGREVAIKRLSINSKQGVEEFKNEVLLIAKLQHRNLVTFIGFCLEEHEKILIYEFVSNKSLDYFLFDSQCKKLLTWVERFNIIGGIVRGILYMHEHSRLKVIHRDLKPSNILLDENMIPKISDFGLARIVEISQDEGTTNRIVGTYGYMSPEYAMFGQFSEKSDIYSFGVMLLEIVAGRKNMSSYTPHQGAEGVNGLLNYVWRQWKDQTPLSILDPNIVEDYSKVEVTKCIQIGLLCVQHNPDARPSMVTVASYLSSYSIELPTPQEPTFFLHRRTNSKSHAQESSSTQSANSSSLFSMNEMSITNFIPR* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2471 825 Gene3D Phosphorylase Kinase; domain 1 458 570 - -
Psa1g2471 825 ProSiteProfiles Gnk2-homologous domain profile. 56 166 IPR002902 -
Psa1g2471 825 SUPERFAMILY Protein kinase-like (PK-like) 478 810 IPR011009 -
Psa1g2471 825 ProSiteProfiles Gnk2-homologous domain profile. 298 406 IPR002902 -
Psa1g2471 825 SMART serkin_6 495 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2471 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Psa1g2471 825 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 177 - -
Psa1g2471 825 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 430 815 - -
Psa1g2471 825 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 185 412 - -
Psa1g2471 825 CDD STKc_IRAK 501 770 - -
Psa1g2471 825 Gene3D - 196 292 IPR038408 -
Psa1g2471 825 Gene3D - 301 406 IPR038408 -
Psa1g2471 825 Gene3D - 58 166 IPR038408 -
Psa1g2471 825 Gene3D - 1 50 IPR038408 -
Psa1g2471 825 ProSiteProfiles Protein kinase domain profile. 495 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2471 825 MobiDBLite consensus disorder prediction 790 809 - -
Psa1g2471 825 Pfam Protein kinase domain 496 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2471 825 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 430 815 - -
Psa1g2471 825 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 185 412 - -
Psa1g2471 825 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 1 177 - -
Psa1g2471 825 Pfam Salt stress response/antifungal 315 402 IPR002902 -
Psa1g2471 825 Pfam Salt stress response/antifungal 1 47 IPR002902 -
Psa1g2471 825 Pfam Salt stress response/antifungal 209 288 IPR002902 -
Psa1g2471 825 Pfam Salt stress response/antifungal 68 164 IPR002902 -
Psa1g2471 825 ProSiteProfiles Gnk2-homologous domain profile. 1 50 IPR002902 -
Psa1g2471 825 ProSitePatterns Protein kinases ATP-binding region signature. 501 523 IPR017441 GO:0005524
Psa1g2471 825 ProSiteProfiles Gnk2-homologous domain profile. 192 292 IPR002902 -
Psa1g2471 825 Gene3D Transferase(Phosphotransferase) domain 1 571 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2471 Psa-Chr1 207272075 207276183 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2471 192 825 Receptor kinase-like Gene Family AT4G05200 41.906 1.21e-168 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa1g2471 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2471 - - mtr:MTR_6g055960 1187.56