Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2461 ATGTCTGAAAAAATTTCTATCGGAAATATTGAAGATAAGAATTTCAAACGCAAATTGATTAAAGAATTAGAGCTAGAATTGGAAAATGAATCGACAAATATTGCACCATCATTTCAAATTGATTCAGAGAAAGGAAAAATGGTTGAAGAGACGAAGCAAGAACTGCATAAAGAAACTAAGGTAATAACACCATCCGATGAATTTAAAGATTTAATGTCTTTGAGGCTTGACAATAACACCAAACCAACTTCCAATATGTTACAGGATAGTGAACATTCAAGTTCATCCAAAAATGTTATTACTGAAGTTTTATCTGAGGAAGTGAACGAATATTTCTGTCTTTTTTGTAACAAGAAATTCTCGACTTATCAAGCTCTTGGAGGACACCAAAACGCTCATAAGCGTGAACGTGACTTCAAAAAAAATGAACAAAGAAAGAGGGAGGAGGAAATGGATTCCACCCTAAGTTTTAGATCTAGTTTTTCACACTCTTATCCTTATTCAAAATCTATTCACTATCAAGGGTATCCTTATTTATGTGGCAACTTTCAACAATCAATTGAAACTCATATGAACAATACCATGCCTTCTTTGCTTGGTTCTCCGTCTCTGGGCTATGGAGGTATGTATATGCCAAATACACCTTCTCCACCACCTTCTTTGTTTGGTTCTCCGTCTATAGGCTATGGAGGGATGTATATGCCAAATACACCTTCCCCGCCACCTCTATTTGTGATGCCAATATCAAAGCCACCCATCACAATACCACAATTTGGGATGACTAATTTTTTGGATGGAAATCAAACTTATGCGCTGCCAATTTCTCAAAGGGCAAGCATTATGGAGTTGAGACTTTCTGGTCAAACTAATCAAACCCTTTCATTTCATGAGAGTACAGAAGAAATTTTCAATGCTCAATTTCCTTCTCACGATCTTCCAATAGAAACACATAATTTTATTGGAGAAGGTCAATTTCAAGCAGAGACTAATTTGTCTTCTTCATCTACCGAATCAATAATGGAAGAACTCAACTTGAATCTCAAGCTTTAA 1050 0.3562 MSEKISIGNIEDKNFKRKLIKELELELENESTNIAPSFQIDSEKGKMVEETKQELHKETKVITPSDEFKDLMSLRLDNNTKPTSNMLQDSEHSSSSKNVITEVLSEEVNEYFCLFCNKKFSTYQALGGHQNAHKRERDFKKNEQRKREEEMDSTLSFRSSFSHSYPYSKSIHYQGYPYLCGNFQQSIETHMNNTMPSLLGSPSLGYGGMYMPNTPSPPPSLFGSPSIGYGGMYMPNTPSPPPLFVMPISKPPITIPQFGMTNFLDGNQTYALPISQRASIMELRLSGQTNQTLSFHESTEEIFNAQFPSHDLPIETHNFIGEGQFQAETNLSSSSTESIMEELNLNLKL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2461 349 MobiDBLite consensus disorder prediction 130 152 - -
Psa1g2461 349 Coils Coil 13 33 - -
Psa1g2461 349 Pfam C2H2-type zinc finger 113 135 - -
Psa1g2461 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Psa1g2461 349 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 30 170 IPR044246 GO:0009788
Psa1g2461 349 Gene3D Classic Zinc Finger 87 165 - -
Psa1g2461 349 MobiDBLite consensus disorder prediction 128 152 - -
Psa1g2461 349 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Psa1g2461 349 PANTHER ZINC FINGER PROTEIN 1-LIKE 30 170 - -
Psa1g2461 349 SUPERFAMILY beta-beta-alpha zinc fingers 110 140 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2461 Psa-Chr1 206005778 206006827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2461 111 222 C2H2 Transcription Factor Family AT5G27880 39.316 8.35e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2461 - - cam:101490368 167.162