Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2449 ATGAATGACTTTTGGAGCATGATTTGTGGGGAGTCTGGTTGTTCTGATAATGGAGGAAAGCATTGTTATGATATAAAACTTCTGAGAGATCCTTCTTCTTGCATCACCCATGTGTTTGTAAGTTGCTTTGATGTGATCCTGCTGATAGTGTTGTCATTCATCATGATCCAGAAGTCCTTGAAACCCTCTCGAAGTCGAGTAAAATATTCAAATTTGCAGATTGTTTCAGCCATAACGAATGGCTCTCTTGGGCTGTTGCATTTATGCTTAGGAATTTGGGTTTTACTGGAGAACTTGAGGAAAACCGACAGTGCCTTTCCTCTTAATGGGTGGTTGCTAGAACTCTTTCATGGACTCACATGGTTGTCAGTAAGTTTAACCGTAAGCCTTCAGGTAAAACAACTCTCAAGAGCATGGTTGTGGATGTTTTCTGTTCTCACATTCTTTGTTTCTGGTATATTATGTGCGTTATTCGTGTCTAATTCAATTGGCAGCGGCAAACTGTCTCTTGAGGCAGTTTTATATGTTCTATCTTTTCCAGGAGCAATGTTACTGTTGTTATGCACATACACATACAAAGCATGTGAATGTGAAGATGCTGACAGGGAAATTGGTGAAAGTCTCTATGCTCCTTTAAATGACCAACTCAATGAAGATGAGCCTGTTAGCATTGTAACCCCATTTTCCGAAGCTGGATTCTTTAGTAATATTTCATTTTGGTGGTTGAATCCTTTGATGAAAACGGGTCGAGAGAAAACACTTCTAGACGAGGATATCCCAATGTTAAGAGAGTTGGACCACGCAGAAAGTTGTTATTCATCGTTTGTAGGAAGGTTAAACAAACAAAAACAACATGAACCGTCACCACATTCGTCGATTTTATGGACAATAATTTTGTGCCACAAGAGCGAGATTCTGATAACAGGATTCTTGGCTTTTCTCAAGGTACTCACTCTATCTTCAGGTCCTCTACTTCTGAATGAATTTATATTGGTTGCAGAAGGTAATAAAAGTTTCAAATATGAAGGCTATGTATTAGTCATATCAATCTTCTTTATAAAGATCATAGAATCCTTATCACAAAGACAATGGTATTTCCGCAGTAGACTAGTTGGAATGAAAGTTAGATCTCTACTTACTGCAGCCGTTTATAAGAAAATTTTAAGGCTATCCAATTCTGCTAGACAGATTCACTCAAGTGGTGAGATACTGAATTATACAACCGTGGATGCTTATAGAATTGGAGAATTTCCATTCTGGTTTCACCAGATTTGGACAACAATCCTCCAGTTAGGTATTGGTTTAGTAATTCTTTTCCGCACAATTGGACTAGCAACACTAGCATCACTGGCAGTGATAGTTCTCACTGTGATTAGCAACGCTCCACTAGCGAAGTTACAACACAAGTTTCAAAGCAAACTTATGGTAGCACAAGATAAGAGATTAAAGGCTAGTTCTGAGGCTCTCGTGAATATGAAAGTCCTGAAGCTNATTCAACTTGCTCGTGCTCTTTATCAGAATGCTGATATATATCTATTGGATGATCCGTTTAGTGCTGTTGATGCACATACTGCAAAAAATTTGTTTAATGACTATATCATGGAAGGACTCAAAGGAAAAACAGTCTTACTCGTGACTCATCAAGTCGATTTCCTCCCAGCATTTGATTCTATTTTGTTGATGTCTAATGGGGCAATCCAACAAGCTGGTCCATATCACCAGTTATTGACCTCGAGCAAAGAATTCAATGGTCTTGTCAATGCTCACAAAGAGACTGCTGGTTCTGACCAACTTGTGAGTGCTACTTTTTCCCAAAAAAGTTTAACTTCCATAAAGAGTACGCAAGCTTCCGCGTTAAAGCAGTATAAAGCACCAAATGGAAATCAATTAATTCAGCAAGAAGAGAGAGGGAAGGGAGACATGGGAATGAAGCCTTACTTACAATATCTGAATCGGATGAAAGGCTATATATTACTCTCTATGGCTTCCCTTTGCTACCTTATTTTTATGATTTGTCAGATATTGCAAAACTCATGGATGGCTTCTAATGTTGACAATCCTCTTGTTAGCACATTGCAACTGGTTTTTGTTTATTTCCTAATTGGTGTTTTTTCATCAGTTTTCATGTTCATCAGATGTCAATGTTTAGTTACTTTGGGTCTTCAATCATCAAAAGATTTATTTTCACAGTTGATGAACTCCCTCTTCCGCGCACCTATGTCATTTTATGACTTTACACCATTGGGAAGGGTACTTAGTAGGGTATCATCTGATCTGAGTATTGTGGATCTTGACATTCCATTTAGCCTCAGTTTTGCCGTTGCTGAGCACTATAAGGTACTTATTTATCTTATAGTTTGGCGTTGTCACATGGCAAGTCTTGATAGTGGCTATACCAATGGTTTATGTTGCTATTCACATGCAGAGATACTACTTTGCCTCAGCAAAAGAAGTGATGCGGTTGAATGGCACAACAAAATCCTCTTTAGCAAATCATGTAGCCGAAACTGTTGCTGGAGCTGTAACAATAAGGGCTTTTGA 2541 0.3845 MNDFWSMICGESGCSDNGGKHCYDIKLLRDPSSCITHVFVSCFDVILLIVLSFIMIQKSLKPSRSRVKYSNLQIVSAITNGSLGLLHLCLGIWVLLENLRKTDSAFPLNGWLLELFHGLTWLSVSLTVSLQVKQLSRAWLWMFSVLTFFVSGILCALFVSNSIGSGKLSLEAVLYVLSFPGAMLLLLCTYTYKACECEDADREIGESLYAPLNDQLNEDEPVSIVTPFSEAGFFSNISFWWLNPLMKTGREKTLLDEDIPMLRELDHAESCYSSFVGRLNKQKQHEPSPHSSILWTIILCHKSEILITGFLAFLKVLTLSSGPLLLNEFILVAEGNKSFKYEGYVLVISIFFIKIIESLSQRQWYFRSRLVGMKVRSLLTAAVYKKILRLSNSARQIHSSGEILNYTTVDAYRIGEFPFWFHQIWTTILQLGIGLVILFRTIGLATLASLAVIVLTVISNAPLAKLQHKFQSKLMVAQDKRLKASSEALVNMKVLKLIQLARALYQNADIYLLDDPFSAVDAHTAKNLFNDYIMEGLKGKTVLLVTHQVDFLPAFDSILLMSNGAIQQAGPYHQLLTSSKEFNGLVNAHKETAGSDQLVSATFSQKSLTSIKSTQASALKQYKAPNGNQLIQQEERGKGDMGMKPYLQYLNRMKGYILLSMASLCYLIFMICQILQNSWMASNVDNPLVSTLQLVFVYFLIGVFSSVFMFIRCQCLVTLGLQSSKDLFSQLMNSLFRAPMSFYDFTPLGRVLSRVSSDLSIVDLDIPFSLSFAVAEHYKVLIYLIVWRCHMASLDSGYTNGLCCYSHAEILLCLSKRSDAVEWHNKILFSKSCSRNCCWSCNNKGF* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2449 846 CDD ABC_6TM_ABCC_D1 307 497 IPR044746 GO:0140359
Psa1g2449 846 Gene3D ABC transporter type 1, transmembrane domain 599 792 IPR036640 GO:0005524|GO:0016021
Psa1g2449 846 Pfam ABC transporter transmembrane region 306 506 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g2449 846 Pfam ABC transporter transmembrane region 671 786 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g2449 846 Gene3D ABC transporter type 1, transmembrane domain 278 512 IPR036640 GO:0005524|GO:0016021
Psa1g2449 846 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 65 497 - -
Psa1g2449 846 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 498 786 - -
Psa1g2449 846 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 373 588 IPR003439 GO:0005524
Psa1g2449 846 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 306 497 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g2449 846 SUPERFAMILY ABC transporter transmembrane region 640 786 IPR036640 GO:0005524|GO:0016021
Psa1g2449 846 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 662 774 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g2449 846 SUPERFAMILY ABC transporter transmembrane region 294 505 IPR036640 GO:0005524|GO:0016021
Psa1g2449 846 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 588 IPR027417 -
Psa1g2449 846 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 65 497 - -
Psa1g2449 846 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 498 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2449 Psa-Chr1 203596440 203600677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2449 498 613 Calmodulin-binding Proteins AT2G36910 27.642 7.91e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2449 K05666 - gmx:100787314 677.167