Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2442 ATGAACATGGATATCTTCCACAATGCATCACTTTCTACCCTTGATGATCTATTCCCTCCTCACAACATGGAAGTGGATTTTGGGATGGAGTGGTTATCAGTTTTTGTTGAAGAATGTTTTTCAAGTAAACCAACTTGTGTCATAGAACCTTCTTCTACTCTTCAAATTCAAACAACAACTACCAACAAAAATCCTTCAAACACAATACAAAAACCTCAACAAAACCAATCTTATATACATAATTTTCTTGTCCCCAGAAAACCGAGAAGCAAAAGAAAAAGACTTTCATCTCCAAGAACCAAAATTTGGTCACATTCATATCCTCCTCTTTTGAAACAAACATATTGGTTAGCCGAAAACGAACTCGTTAACCCTAAATTAAAAATTGAGTCTAAAGTATCTGCAGTTGCATGCAGAGATAATTTGAAAAAAGACAGAAAGAATAAAAGTGATGATGTTGGAAATGCAAGAAGGTGTAGTCATTGTTTGTCACAAAGGACACCACAATGGAGGGCAGGACCATTGGGACCAAAGACATTATGCAATGCATGTGGTGTGAGGTATAAGTCTGGTAGGTTGTTGCCAGAGTATAGGCCAGCAAAGAGTCCCACTTTTGTCACTTGCTTACATTCTAATTCACACAAAAAAGTTTTGGAGATGAGAATGCAATTTAGGTAG 678 0.3673 MNMDIFHNASLSTLDDLFPPHNMEVDFGMEWLSVFVEECFSSKPTCVIEPSSTLQIQTTTTNKNPSNTIQKPQQNQSYIHNFLVPRKPRSKRKRLSSPRTKIWSHSYPPLLKQTYWLAENELVNPKLKIESKVSAVACRDNLKKDRKNKSDDVGNARRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVTCLHSNSHKKVLEMRMQFR* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2442 225 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 156 216 - -
Psa1g2442 225 PANTHER GATA TRANSCRIPTION FACTOR 4 223 - -
Psa1g2442 225 ProSiteProfiles GATA-type zinc finger domain profile. 153 189 IPR000679 GO:0006355|GO:0043565
Psa1g2442 225 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 4 223 - -
Psa1g2442 225 CDD ZnF_GATA 158 205 IPR000679 GO:0006355|GO:0043565
Psa1g2442 225 Pfam GATA zinc finger 159 193 IPR000679 GO:0006355|GO:0043565
Psa1g2442 225 ProSitePatterns GATA-type zinc finger domain. 159 184 IPR000679 GO:0006355|GO:0043565
Psa1g2442 225 Gene3D - 142 219 IPR013088 GO:0006355|GO:0008270
Psa1g2442 225 SMART GATA_3 153 203 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2442 Psa-Chr1 202790850 202792236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2442 16 223 C2C2-Gata Transcription Factor Family AT4G32890 41.509 4.64e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa1g2442 GATA 8.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2442 - - ccaj:109793203 261.151